Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1265 ATGATGGAAAATTTCCCAAATTTTCTTCCAACTTCATCTTCTTCAACCTCCTTCTCTCTCCAACAAATGCTGATTTCTCGAGCTTCCGAGATCGCCGGAATCCATGGAGGCCATTTCGGACAGACGCCCATCTCCGACGGGTTCCCGTTGTTTCGCGACGTTTCGACGAACGACATGTCGGTCGATTCGACGACAAGTATCAAGGACGACGTCGTTTCGATGAGTAAAAGCTTCTTCCATGTTGATGGGTCGTCAGCAGAAATTGGAGTGGATAGGTTGGAGAAGAAGGCCGTGGCCGGGGGAGCAACGACGGCGATGACGATGGCGACGGGACGGGGAGATTATGATAAGAAAAAGAAAACGAGAAGCCGGAGATTTGCTTTTCAAACGAGGAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAGTATGGACAGAAGGCTGTCAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTTCAAAGGCTTACAAGAGATGAAGGTGTGGTTGTGACAACTTATGAAGGAATGCACTCTCATCCCATTGAGAAATCCACTGATAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA 651 45.16 MMENFPNFLPTSSSSTSFSLQQMLISRASEIAGIHGGHFGQTPISDGFPLFRDVSTNDMSVDSTTSIKDDVVSMSKSFFHVDGSSAEIGVDRLEKKAVAGGATTAMTMATGRGDYDKKKKTRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGMHSHPIEKSTDNFEHILSQMQIYTSY 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11984076 11986637 - Lag0021782.1 Lac7g1265 614166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1265 216 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 104 197 IPR044810 GO:0003700(InterPro)
Lac7g1265 216 ProSiteProfiles WRKY domain profile. 132 197 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g1265 216 SMART WRKY_cls 137 196 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g1265 216 Pfam WRKY DNA -binding domain 138 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g1265 216 FunFam WRKY transcription factor 57 123 197 - -
Lac7g1265 216 Gene3D WRKY domain 121 196 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g1265 216 SUPERFAMILY WRKY DNA-binding domain 129 196 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2176 Lac-Chr5:40334791 Lac7g1265 Lac-Chr7:11984076 2.00E-28 dispersed
Lac7g0198 Lac-Chr7:1561394 Lac7g1265 Lac-Chr7:11984076 2.40E-11 dispersed
Lac7g1265 Lac-Chr7:11984076 Lac9g2256 Lac-Chr9:41926862 4.30E-25 dispersed
Lac7g1265 Lac-Chr7:11984076 Lac8g0090 Lac-Chr8:1267928 2.90E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24183 PF03106 WRKY 7.90E-26 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1265 - - - 0.0