Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g1318 | ATGGAGGTAGAAACAATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTTTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTGTGGCTTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGAGCTGGAGCCGTACAACCACAGCCTGAGGAACAGAGGTTTATGTCTTGTTCCAATCTCTTGTACTGCCGGAGTTGCACGCAGCAACGGTGCTGATATTTGGGCTCCTGTGAAGACAACCTCCCCCAAATTTGAGAAGTCCATCTCACCATTCAATTGA | 453 | 45.7 | MEVETMMEQKRNLCSVDESSLTSLTSKRHKTDFSISSKERKDKLGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQELEPYNHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKSISPFN | 150 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 12822545 | 12824526 | - | Lag0021835.1 | Lac7g1318 | 614219 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g1318 | 150 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 30 | 93 | IPR036638 | GO:0046983(InterPro) | |
| Lac7g1318 | 150 | Gene3D | - | 25 | 110 | IPR036638 | GO:0046983(InterPro) | |
| Lac7g1318 | 150 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 28 | 77 | IPR011598 | GO:0046983(InterPro) | |
| Lac7g1318 | 150 | SMART | finulus | 36 | 83 | IPR011598 | GO:0046983(InterPro) | |
| Lac7g1318 | 150 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 30 | 121 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
| Lac7g1318 | 150 | FunFam | Transcription factor bHLH113 family | 27 | 103 | - | - | |
| Lac7g1318 | 150 | CDD | bHLH_AtbHLH_like | 34 | 85 | IPR045239 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g1823 | Lac-Chr4:37366317 | Lac7g1318 | Lac-Chr7:12822545 | 1.00E-51 | dispersed | |
| Lac6g0439 | Lac-Chr6:3578618 | Lac7g1318 | Lac-Chr7:12822545 | 3.10E-19 | dispersed | |
| Lac7g1318 | Lac-Chr7:12822545 | Lac8g2489 | Lac-Chr8:42817572 | 2.90E-12 | dispersed | |
| Lac7g1318 | Lac-Chr7:12822545 | Lac5g1540 | Lac-Chr5:31098152 | 5.60E-24 | transposed |
Pathway information