Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1464 ATGGCACAACAGCTTGCTGCTCACCAAAATGGTTCATTAGAAAGCTTGTGTACGAGCCATCAGGATCCTCTCAACTGGGGTGTGGCGGCTGAAGCACTCAAGGGCAGTCATCTGGATGAGGTGAAGCGGATGGTGGAAGAGTATCGGAGGCCTGTGGTGAAGCTTGGAGGAGAGACTCTCACCATTTCCCAAGTCGCTGCGATTGCCACTCGTGATAATGATGTCTTGGTTGAATTGGCCGATTCTGCAAGGGTTGGTGTCAAAGCGAGCAGTGATTGGGTGATGGACAGCATGAGTAAAGGTACTGATAACTATGGTGTCACTACTGGCTTTGGTGCTACTTCCCATAGAAGAACCAACCAAGGTGAAGCTCTTCAAAAGGAGCTAATCCGATTCTTGAATGCCGGCATCTTTGGAAATGGGACTGAATCAAGTCACACTCTGCCTCACTCTGCTACGAGAGCGGCTATGTTGGTGAGAATCAACACTCTCCTTCAGGGTTATTCGGGGATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAATCACAACGTCACTCCATGTTTGCCGCTGCGAGGGACAATTACAGCTTCTGGGGATTTGGTTCCTTTGTCTTATATTGCCGGGCTACTCACGGGTCGTCATAATTCGAAAGCTATTGGACCCACTGGAGAAACCCTTGATGCAAAGGCTGCTTTTAAACAAGCTGGTATTGATTCTGGGTTCTTTAAGTTGCAACCTAAGGAAGGCCTCGCTCTTGTCAACGGCACCGCGGTCGGTTCTGGCTTGGCTTCCACGGTTCTCTTTGAGGCAAATATTTTGGCAGTTTTATCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACAGACCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTGGAGGGAAGCTCGTACATGAAAACAGCTAAGAAATTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCGCTTAGAACTTCTCCTCAATGGTTGGGTCCTTTAATTGAAGTCATTCGATTCTCCACTAAGTCAATCGAGCGGGAGATTAATTCAGTCAACGATAACCCTTTGATTGATGTTTCGAGAAACAAGGCATTGCATGGAGGCAACTTCCAAGGAACACCGATTGGAGTTTCCATGGACAACACTCGTCTGGCCATTGCGTCAATTGGAAAGCTCATGTTTGCCCAATTTTCAGAATTAGTCAATGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCTAGCTTAGATTATGGGTTTAAAGGCACTGAGATTGCTATGGCTTCATATTGCTCCGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTTCAGAGCGCTGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCGGAAGCCATCGATATCCTAAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGCCAAGCAATTGACTTGCGACATTTGGAAGAAAACTTGAAGAGCACGGTTAAAAACACAGTCAGCCAAATAGCAAAAAAAGTGTTGACCACATCTTCTACCGGCGCACTTCATCCATCAAGATTTTGCGAGAAAGATCTACTTAAAGTTGTTGACAGAGAATATACCTTTGCATACATCGATGATCCATGCAGCACTACTTATCCATTGATGCAGAAGTTGAGGCAAGTTCTCGTTCAACATGCACTTGAAAATGGCGATGATGAAAAGAACACAAACACTTCAATCTTCCAAAAGATCAACGCTTTTGAAGAGGAATTAAAGACAAATTTACCAAAGGAGGTTGAAAATGTGAGGTTGGAATATGAGAGCGGAAATTCTACTCTTAAAAATCAAATTAAGGATTGCAGATCTTATCCATTATATAGATTTGTCAGAGAGGAGTTGGGAACCAAATTGCTAACGGGAGAAAAGGTGATATCTCCAGGAGAAGAGTGCGAGAAGGTGTTCACTGCTTTGTGTCAAGGAAAGATGATTGACACTATCTTCGAGTGCCTTAACGAGTGGAATGGAGCTCCAATCCCTATTTGCTAA 2142 43.65 MAQQLAAHQNGSLESLCTSHQDPLNWGVAAEALKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDNDVLVELADSARVGVKASSDWVMDSMSKGTDNYGVTTGFGATSHRRTNQGEALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPTGETLDAKAAFKQAGIDSGFFKLQPKEGLALVNGTAVGSGLASTVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQIAKKVLTTSSTGALHPSRFCEKDLLKVVDREYTFAYIDDPCSTTYPLMQKLRQVLVQHALENGDDEKNTNTSIFQKINAFEEELKTNLPKEVENVRLEYESGNSTLKNQIKDCRSYPLYRFVREELGTKLLTGEKVISPGEECEKVFTALCQGKMIDTIFECLNEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15344884 15347025 - Lag0021981.1 Lac7g1464 614365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1464 713 CDD PAL-HAL 58 523 IPR001106 -
Lac7g1464 713 Pfam Aromatic amino acid lyase 60 538 IPR001106 -
Lac7g1464 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Lac7g1464 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac7g1464 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
Lac7g1464 713 FunFam Phenylalanine ammonia-lyase 260 566 - -
Lac7g1464 713 Gene3D - 526 647 IPR023144 -
Lac7g1464 713 Gene3D - 14 259 IPR024083 -
Lac7g1464 713 PANTHER HISTIDINE AMMONIA-LYASE 19 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac7g1464 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Lac7g1464 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Lac7g1464 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2142 Lac-Chr1:42854717 Lac7g1464 Lac-Chr7:15344884 0.00E+00 dispersed
Lac1g2143 Lac-Chr1:42859865 Lac7g1464 Lac-Chr7:15344884 0.00E+00 dispersed
Lac1g2146 Lac-Chr1:42874633 Lac7g1464 Lac-Chr7:15344884 0.00E+00 dispersed
Lac1g2148 Lac-Chr1:42878883 Lac7g1464 Lac-Chr7:15344884 0.00E+00 dispersed
Lac7g1464 Lac-Chr7:15344884 Lac7g1470 Lac-Chr7:15432577 0.00E+00 dispersed
Lac7g1463 Lac-Chr7:15331944 Lac7g1464 Lac-Chr7:15344884 0.00E+00 tandem
Lac7g1464 Lac-Chr7:15344884 Lac7g1465 Lac-Chr7:15374003 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1464 K10775 - csv:101204574 1319.29