Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1470 ATGGCACAACAGCTTGCTGCTCACCAAAACAGTTCGGTGGAGAGCTTGTGCAGCAGCCATCAGGATCCACTTAACTGGGGTGTGGCGGCCGAATCAATGAAGGGAAGTCATTTGGATGAGGTGAAGCGGATGGTGGAAGAATATCGGAGGCCTGTGGTGCAGCTTGGAGGACAGACACTCACCATTTCCCAAGTCGCTGCTATTGCCACTCGTGATAATGATGTCGTGGTTGAATTGGCCGAGTCTGCAAGGGCTGGTGTCAAAGCCAGTAGTGATTGGGTGATGGAGAGCATGAGTAAAGGCACCGACAGTTATGGTGTCACTACTGGCTTTGGTGCCACTTCCCACAGAAGAACCAACCAAGGCAGTGCTCTTCAAAAGGAGCTCATTCGATTCTTGAATTCTGGCATCTTCGGAAATGGGACTGAGTCAAGCCACACTTTGCCTCACTCTGCCACTAGAGCAGCCATGTTGGTGAGAATCAATACTCTCCTTCAAGGCTATTCTGGCATTAGATTCGAGATTTTGGAAGCGATTGCTAATCTCTTGAACCACAACGTCACTCCATGCTTGCCATTGCGTGGGACAATTACAGCTTCGGGAGATTTAGCTTGTATTGATTCTGGATTCTTTGAGTTGCAGCCTAAGGAAGGCCTTGCTCTTGTTAATGGCACTGCTGTTGGTTCTAGATTAGCTTCCATTGTTCTTTTCGAGACAAATATATTTGTTGTTTTGTCTGAAATCTTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACTGATCATTTGACCCATAAGTTGAAGCACCACCCTGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTGGTTGGAAGCTCCTACATGAAAACGGCCAAGAAATTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTATGCTCTTAGAACTTCTCTTCAGTGGTTAGGTCCCCTGATTGAAGTGATTCGCTTTTCCACAAAGTCAATTGAGCGGGAGATTAATTCCGTCAATGACAACCCTTTGATCGATGTTTCAAGAAACAAGGCGTTGCATGGAGGCAATTTCCAAGGAACGCCAATTGGAGTTTCCATGGACAACACTCGTTTGGCCATTGCATCAATTGGGAAACTCATGTTTGCCCAATTTTCAGAGCTTGTCAATGATTTCTACAGTAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCAAGCTTGGATTATGGTTTCAAAGGTGTTGAGATTGCCATGGCTTCATACTGCTCCGAGCTCCAATATCTTGCAAATCCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACACAACCAAGATGTTAACTCCCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTAAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGCCAAGCAATTGACTTGAGACATTTGGAGGAAAACTTGAAGAGCACCGTCAAAAACAAAAAAGATCTACTTCAAGTTGTAGACAGAGAATACACTTTTGCCTACATTGATGATCCATGCAGTGCTACATATCCATTGATGCAAAAGCTGAGGCAAGTTCTCGTTGAGCATGCACTTGAAAATGGTGATAATGAGGTGAACACAAACACTTCAATCTTCCAAAAGATTGGTGCTTTTGATGAGGAATTAAAAGCAGTATTACCAAAGGAGGTTGAAAATGTAAGATTAGCATATGAGAGCGGAAATTCTAAAATTGAAAATCAGATTAAGGACTGTAGATCTTACCCATTATACAAATTTGTGAGAGAAGAACTAGGAACAAGAATGCTAACCGGAGAAAAGGTGATATCTCCAGGAGAAGAGTGTGAAAAGGTATTTACAGCTTTGTGTCAAGGAAAGATGATCGACTTTATTTTTGAGTGCTTGAAGGAGTGGAATGGAGCTCCAATCCCTATTTGCTAA 1968 43.04 MAQQLAAHQNSSVESLCSSHQDPLNWGVAAESMKGSHLDEVKRMVEEYRRPVVQLGGQTLTISQVAAIATRDNDVVVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTNQGSALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLACIDSGFFELQPKEGLALVNGTAVGSRLASIVLFETNIFVVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILVGSSYMKTAKKLHEMDPLQKPKQDRYALRTSLQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSASRNPSLDYGFKGVEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNKKDLLQVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALENGDNEVNTNTSIFQKIGAFDEELKAVLPKEVENVRLAYESGNSKIENQIKDCRSYPLYKFVREELGTRMLTGEKVISPGEECEKVFTALCQGKMIDFIFECLKEWNGAPIPIC 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15432577 15434719 + Lag0021987.1 Lac7g1470 614371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1470 655 NCBIfam phenylalanine ammonia-lyase 205 501 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac7g1470 655 Gene3D - 492 501 IPR023144 -
Lac7g1470 655 Gene3D - 503 589 IPR023144 -
Lac7g1470 655 CDD PAL-HAL 58 489 IPR001106 -
Lac7g1470 655 FunFam Phenylalanine ammonia-lyase 13 206 - -
Lac7g1470 655 Coils Coil 488 508 - -
Lac7g1470 655 FunFam Phenylalanine ammonia-lyase 226 513 - -
Lac7g1470 655 Gene3D - 13 207 IPR024083 -
Lac7g1470 655 SUPERFAMILY L-aspartase-like 22 655 IPR008948 GO:0003824(InterPro)
Lac7g1470 655 Gene3D Fumarase/aspartase (Central domain) 226 491 - -
Lac7g1470 655 Gene3D Fumarase/aspartase (Central domain) 590 650 - -
Lac7g1470 655 PANTHER HISTIDINE AMMONIA-LYASE 206 655 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac7g1470 655 Pfam Aromatic amino acid lyase 60 205 IPR001106 -
Lac7g1470 655 Pfam Aromatic amino acid lyase 211 495 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g1463 Lac-Chr7:15331944 Lac7g1470 Lac-Chr7:15432577 0.00E+00 dispersed
Lac7g1464 Lac-Chr7:15344884 Lac7g1470 Lac-Chr7:15432577 0.00E+00 dispersed
Lac7g1470 Lac-Chr7:15432577 Lac8g2407 Lac-Chr8:42161594 1.90E-286 dispersed
Lac7g1465 Lac-Chr7:15374003 Lac7g1470 Lac-Chr7:15432577 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1470 K10775 - csv:116401606 1186.4