Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1601 ATGCATCTTCAGCTTTCTGTTGCTCGCTTCTTTTCTTGGCTCACCAACTTGTGTTCATCAGGGATCTACAGACCCGTTGAGTTGTGGCAGCTTGAGGATCAAACCCTTCACACACCCCCCAAAAAGCACCATGCTTCCTCTGTCTTTACCCTTAGAGAAATGGAAGACGCCACCTGTTCCTTTAGCGACGCCAACTTCCTCGGGAAAGGTGGCTTCGGTCGAGTTTATCGGGGCACCTTGCGATCCGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTGCCACCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTCCGAGTGGAAGTAGACATTCTGAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCAGATGGGAAGCATCGCTTTCTGGTCTATGAATATATGCATAAAGGGAATCTGCAAGATCACTTAAATGGAATTGGAGAAGCCAAGATGGATTGGGGAGGGAGGCTGAAAGTGGCACTTGGGGCAGCAAAAGGATTGGCCTATCTCCATTCAAGTTCAGCTGCTGGGATGCCCATTGTCCACAGGGATTTCAAATCCACAAACATTCTTCTTGACTCCAACTTGGATGCAAAGATATCAGATTTCGGACTTGCAAAGTTTATGCCAGAAGGACAAGAATCACATGTGACTGCTAGAGTCCTTGGCACATTTGGATACTTTGATCCCGAGTATACTTCGACTGGGAAACTGAGTGTGCAAAGTGACGTATATGCATTTGGAGTGGTTCTTCTTGAGCTCCTAACTGGCCGCCGAGCAGTGGACTTGAACCAGGGCCCAAGTGATCAAAACCTTGTCGTACAGGTAAGGCATATACTGAATGATCGAAAAAAGTTGCGTAAGGTGATAGATCCAGAAATGAGTCGAAGTTCATATACAATGGAATCCATAGCCATATTTGCAAATCTAGCTTCACGTTGTGTCCGAACAGAGAGCAACGAAAGACCAACAATGGCAGAATGTGTAAGAGAGCTCCAAATGATTATCTACACAAAGTTACAAACTCGCAAGGGCTAG 1056 45.93 MHLQLSVARFFSWLTNLCSSGIYRPVELWQLEDQTLHTPPKKHHASSVFTLREMEDATCSFSDANFLGKGGFGRVYRGTLRSGEVVAIKKMELPPFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIGEAKMDWGGRLKVALGAAKGLAYLHSSSAAGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSVQSDVYAFGVVLLELLTGRRAVDLNQGPSDQNLVVQVRHILNDRKKLRKVIDPEMSRSSYTMESIAIFANLASRCVRTESNERPTMAECVRELQMIIYTKLQTRKG 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18798082 18803018 + Lag0022118.1 Lac7g1601 614502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1601 351 FunFam serine/threonine-protein kinase PBS1-like 29 139 - -
Lac7g1601 351 PIRSF ILK 30 350 - -
Lac7g1601 351 FunFam receptor-like serine/threonine-protein kinase NCRK 140 350 - -
Lac7g1601 351 Gene3D Phosphorylase Kinase; domain 1 28 139 - -
Lac7g1601 351 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524(InterPro)
Lac7g1601 351 CDD STKc_IRAK 67 339 - -
Lac7g1601 351 Pfam Protein kinase domain 64 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g1601 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g1601 351 Gene3D Transferase(Phosphotransferase) domain 1 140 350 - -
Lac7g1601 351 PANTHER OS01G0750732 PROTEIN 42 342 IPR050885 -
Lac7g1601 351 SUPERFAMILY Protein kinase-like (PK-like) 40 344 IPR011009 -
Lac7g1601 351 ProSiteProfiles Protein kinase domain profile. 61 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g1601 Lac-Chr7:18798082 Lac11g2562 Lac-Chr11:41686795 2.10E-74 dispersed
Lac11g1043 Lac-Chr11:11828326 Lac7g1601 Lac-Chr7:18798082 2.00E-62 wgd
Lac12g0877 Lac-Chr12:9089906 Lac7g1601 Lac-Chr7:18798082 1.30E-66 wgd
Lac12g1721 Lac-Chr12:33040793 Lac7g1601 Lac-Chr7:18798082 8.30E-29 wgd
Lac2g2460 Lac-Chr2:35879281 Lac7g1601 Lac-Chr7:18798082 1.60E-54 wgd
Lac3g1859 Lac-Chr3:20715495 Lac7g1601 Lac-Chr7:18798082 8.10E-66 wgd
Lac3g1772 Lac-Chr3:18308597 Lac7g1601 Lac-Chr7:18798082 1.00E-44 wgd
Lac7g1601 Lac-Chr7:18798082 Lac9g0835 Lac-Chr9:17529861 3.00E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86337 PF00069 Pkinase 5.50E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1601 - - - 0.0