Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1602 ATGTCGGCCGCTCCGCGTCGCGATGACGTTGCGACAATAGCTCCAACTAACCCAACTGTGAGCATTGAATTGCTCGATCAAAATATCAGCGATACATCGACCTACCAGCATTCAAGAGCGATGGCGATGCGACCAAAAATGACATGGGGAAATGGCCGATTGCCTTTTTGTTCCAATCACTGGTTTGGTGAAGAAGGGAACTATCAAGTTGTGGCGCGGTGGGAGCGAAAATATGGGGGCGATTATGGCGTTGGAGTGCTTCAATCCTTGAAAGATGAGTGGCAAAATATTCCACCAAGCTGGGAAACATCAAATGATCCCTGTGGAACTCCCTGGGAAGGAGTGACTTGCAACAATTCAAGAGTAATTGCATTGACTTTATCAAATATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGACTATTGGACCTTTCCTCCAATCGAGATCTAACTGGTTCAATCTCTCCGGAACTAGGGAGTTTGTTGAATTTGAATATCTTGATCCTTTCTGCGTGTGGATTTATTGGTAAAATTCCAGAAGAATTGGGCAATCTTACTGCGCTAACCTTCTTGTCTTTATATTCTAACAAATTGACTGGTACCATACCACCGACTTTGGGAAAACTCTCCAAACTCTATTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGCTCTCCCAGTTTCGACTCCCAAATCTCCGGGTTTGGATTGCTTCTTGAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTTCACCTAATCTTTTTAGCTCCGAGATGTCGACTAGATCGAAATTCTTTAACTGGAGGTGTCCCATCAAACCTAAACGACCTAATAAATGTCAATGAATTGAACTTAGCCAACAATAAGCTAACAGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGACCTTAGTAACAACTCATTTAATTCATCAGTAGCCCCAGAATGGTTCTCAAATCTACAATCTCTCACCACTCTGATTGTTGAATATGGGTCAATACGAGGATATGTGCCAGAAGAAATCTTTAGCTTACCACATATACAACAAGTAAAACTGAAGAACAATGCATTTGGTGGGACATTAAATATGGATGACAGCATCAGCCAATCATTGCAGCTAGTTGATTTGCAAAATAACACTATATCCTCCGTTACCTCTGTTTCGGGATATACCAACGATTTGCTGCTGATAGGAAATCCTGTGTGTAACACTGGTGTCCTCTCAGATACAAACTATTGTCTGCTTCAACAACGACAAACAAAATCCTATTCTACCAGCCTTGTCAACTGTGGAAGTAAGTTATGTTCTCCTGACGAGAAGCTGAACCCTCAGAGTTGTGAATGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGCACCCACGTCCAGGGAATTGTCCAATGTAACTCTGTTTCAATCACTGGAAACGAGCCTTTTGCACCACTTCAACGTTACGCCTTTTATTCAAGACCCTTTCTTTAATGTTGATGATTATCTTGAGATGCAGCTTGCACTTTTTCCAACCAATGATAAGTTTTTCAGTAGGACAGATATTCAGAGATTTGGGCTTGATTTGCACAATCAAACTTACAAACCTCCCCCGAGTTTGGGCCATATGGATAGTGGAACTTCAACCAACACCGGAGTGGTAATTGGAATAGCTGTTGGCTGTGCCTTTCTCGTTCTTTGCCTCATTGGAATTGGAACTTATGCAATTCTACAGAAGAGACGTGTAGAAAAGGCCAAGTCAAATGCTTTATTGGTACCACGTGGAAATGATAGTGGAGGTGCACCACAATTAAAGGGAGCCAGGTGGTTTTCTTACGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGTCATGAGATAGGATCTGGAGGATTTGGCAAGGTATACAGAGGAACGCTGGTGGATGGAAAAGTAGTGGCAATCAAAAGAGCTATGCAAGGATCAATGCAGGGTGGCCATGAGTTCAAGACAGAAATTGAGCTGCTCTCACGAGTTCATCACAAGAATCTTCTTGGTCTAGTGGGATTTTGTTCTGAACAAGGAGAACAGATCCTTGTTTATGAATTCATGCCTAATGGGACACTTAGACAGAGCCTAGCAGGGAAATCTGGTATTTATCTTGATTGGAAGAGAAGACTTCGTATCGCACTTGGGTCTGCCAGAGGACTGACTTACTTGCATGAGCTTGCTAATCCTCCCATAATCCATAGAGATATTAAGTCCACCAACATTTTACTAGATGAATGTTTAAATGCAAAGGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGGAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACCGAGAAAAGTGATGTGTACAGCTTTGGAATAGTTATGTTGGAACTACTAACTGCTAAGTTGCCAATTGAAAAGGGAAAGTACATAGTTCGTGAGGTGCATATGTTGATGAATAAGAGTGATGAAGAATATTATGGTTTGAAGCATATAATGGATGCAACCATAATCAACAATACTACAAGTCTTATTGGGTTTGGAAAGTTCTTAGAGTTGGCCATGCAATGTGTTGAAGAAGCAGCTGCAGACCGGCCCACAATGAGTGAAGTGGTTAAGACAATTGAGAACATTTTGCAAAATGATGGAATAAGTACAACCTCAACATCAGCATCCACATCTGCCACAGAATTTGGGACTTCCAAAACTGCTCCTAGACATCCTTATAATGATGCTATATTGAAAGAGGGTGACAATGGCCGATGA 2865 41.47 MSAAPRRDDVATIAPTNPTVSIELLDQNISDTSTYQHSRAMAMRPKMTWGNGRLPFCSNHWFGEEGNYQVVARWERKYGGDYGVGVLQSLKDEWQNIPPSWETSNDPCGTPWEGVTCNNSRVIALTLSNMGLKGKLGGDIGGLTELRLLDLSSNRDLTGSISPELGSLLNLNILILSACGFIGKIPEELGNLTALTFLSLYSNKLTGTIPPTLGKLSKLYWLDLADNQLTGALPVSTPKSPGLDCFLRLNIFISAKTSYQVPFHLIFLAPRCRLDRNSLTGGVPSNLNDLINVNELNLANNKLTGPLPNLTQMSSLNYVDLSNNSFNSSVAPEWFSNLQSLTTLIVEYGSIRGYVPEEIFSLPHIQQVKLKNNAFGGTLNMDDSISQSLQLVDLQNNTISSVTSVSGYTNDLLLIGNPVCNTGVLSDTNYCLLQQRQTKSYSTSLVNCGSKLCSPDEKLNPQSCECAYPYEGTLYFRAPTSRELSNVTLFQSLETSLLHHFNVTPFIQDPFFNVDDYLEMQLALFPTNDKFFSRTDIQRFGLDLHNQTYKPPPSLGHMDSGTSTNTGVVIGIAVGCAFLVLCLIGIGTYAILQKRRVEKAKSNALLVPRGNDSGGAPQLKGARWFSYDELKKCTNNFSMSHEIGSGGFGKVYRGTLVDGKVVAIKRAMQGSMQGGHEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGKSGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDECLNAKVADFGLSKLVSDSGKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGIVMLELLTAKLPIEKGKYIVREVHMLMNKSDEEYYGLKHIMDATIINNTTSLIGFGKFLELAMQCVEEAAADRPTMSEVVKTIENILQNDGISTTSTSASTSATEFGTSKTAPRHPYNDAILKEGDNGR 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18816416 18823795 - Lag0022119.1 Lac7g1602 614503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1602 954 FunFam Leucine-rich repeat protein kinase family protein 603 712 - -
Lac7g1602 954 MobiDBLite consensus disorder prediction 919 936 - -
Lac7g1602 954 SMART serkin_6 637 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g1602 954 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 713 925 - -
Lac7g1602 954 FunFam Leucine-rich repeat family protein 83 238 - -
Lac7g1602 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 757 769 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g1602 954 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515(InterPro)
Lac7g1602 954 Gene3D Phosphorylase Kinase; domain 1 611 712 - -
Lac7g1602 954 Gene3D Ribonuclease Inhibitor 265 428 IPR032675 -
Lac7g1602 954 Pfam Protein tyrosine and serine/threonine kinase 638 907 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g1602 954 PANTHER RECEPTOR-LIKE PROTEIN 55 101 909 - -
Lac7g1602 954 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515(InterPro)
Lac7g1602 954 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515(InterPro)
Lac7g1602 954 Pfam Leucine rich repeat N-terminal domain 86 118 IPR013210 -
Lac7g1602 954 ProSitePatterns Protein kinases ATP-binding region signature. 643 665 IPR017441 GO:0005524(InterPro)
Lac7g1602 954 Gene3D Ribonuclease Inhibitor 85 262 IPR032675 -
Lac7g1602 954 CDD STKc_IRAK 643 911 - -
Lac7g1602 954 SUPERFAMILY L domain-like 94 420 - -
Lac7g1602 954 MobiDBLite consensus disorder prediction 919 954 - -
Lac7g1602 954 ProSiteProfiles Protein kinase domain profile. 637 912 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g1602 954 Gene3D Transferase(Phosphotransferase) domain 1 713 932 - -
Lac7g1602 954 SUPERFAMILY Protein kinase-like (PK-like) 622 920 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1615 Lac-Chr2:14347267 Lac7g1602 Lac-Chr7:18816416 8.20E-294 dispersed
Lac5g2871 Lac-Chr5:46936317 Lac7g1602 Lac-Chr7:18816416 4.90E-06 dispersed
Lac7g0225 Lac-Chr7:1771760 Lac7g1602 Lac-Chr7:18816416 1.20E-61 dispersed
Lac7g1602 Lac-Chr7:18816416 Lac7g2926 Lac-Chr7:48259264 4.10E-88 dispersed
Lac10g3325 Lac-Chr10:46977279 Lac7g1602 Lac-Chr7:18816416 0.00E+00 transposed
Lac13g2062 Lac-Chr13:29466345 Lac7g1602 Lac-Chr7:18816416 1.60E-10 transposed
Lac9g0018 Lac-Chr9:294240 Lac7g1602 Lac-Chr7:18816416 2.70E-211 transposed
Lac12g0558 Lac-Chr12:5951816 Lac7g1602 Lac-Chr7:18816416 1.50E-51 wgd
Lac4g0157 Lac-Chr4:2834852 Lac7g1602 Lac-Chr7:18816416 2.20E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86338 PF07714 PK_Tyr_Ser-Thr 3.70E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1602 - - - 0.0