Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1688 ATGGAGTTGGTAGCCGAGAAGAAGGATTTTGATTCTGCAAACGACAACAACAAGCTCAACTCTGCTCAAGCAGTTCTCGATTCTTCTTATTCATCCTCAGTCGCTGCTGATGACACTGGTAGTTATAACAATTCCAAAGAAGCTGAAGATTTAAGTGAACGCGTAGCTCGAGACCTCAAAGATGGTCTTCATCCCCTAAAGCACAAGTTTGCATTTTGGTACACTCGTCGAACACCTGGAGTTCGGACTCAAACATCATATGAGGACAACATAAAAAAGATCGTGGACTTTAGCTCGGTTGAAGGTTTTTGGGTAAGCTATTGCCATTTGGCTCGTCCTTCATCATTACCAAGCCCAACAGATTTGCATCTCTTTAAGGAAGGAATCCGGCCACTCTGGGAGGATTCTGCCAACTGCAATGGTGGAAAGTGGATAATACGATTTAAGAAAGTTGTATCTGGTCGATTTTGGGAAGATTTGGTTCTCGCATTAGTCGGCGACCAGCTTGATTTTGGTGATAACATATGCGGTGCTGTGCTTAGCATTCGTTTCAACGAGGATATTTTGAGTGTCTGGAACCGCAATGCATCTGATCATCAGGCTGTGATGGGTCTGCGAGATTCGATCAAACGTCACTTAAAGCTCCCGCATGGGTACGTAATGGAATACAAACCCCACGACGCCTCTCTGCGTGATAACTCATCATACAGAAACACATGGTTGCGAGGAGCAATAATCTTGCTCCCGCTTTTCTCTGTTTTTCCGAATCCTTCTTCTCCCATGGCGGACAAAGGATCTGGAAGTTCTTCCTCTTCTATGATCTCGGCAACTTCAATAGAAGCTCAGATCAATCCGTATTTCTTGCATCACTCTTTTGGATCTTCTTCTGTTCTCGTTTCTCAGCCGTTGCTTGGCGCGATTAATTACACCTCATGGAGTCGCGCTATGCGGATGGTGATTTCAGGCAAGAACAAATTAGGTTTTATCACCGGTAAGATCTCTAAACCTACTGTGGAAGGTCCTATGCTTGAAGCCTGGGAATGCAATAATGATATTATTGCTTCTTGGATCTTGAATTCCGTATCTAAGGAAATTGCTGCGAGCATTGTATACACCGGCTCTGTTCAAGCCGTTTGGAATGAATTACGAGACCGATTCAAACAAGCTAGTGGCCCAGGGATATATCAGCTTCGTAAGGATTTGGTCACTCTTCGTCAAGGTTCCATGACCATCGAGGTTTATTATACAAAACTCAAAACGATCTGGCAGGACCTCAGTGATCATCGACCAACAGCAAGCTGCACTTGTGGAGGATTGAAGCCTTTTCTTGAGCACCTTGATTCATAA 1347 44.32 MELVAEKKDFDSANDNNKLNSAQAVLDSSYSSSVAADDTGSYNNSKEAEDLSERVARDLKDGLHPLKHKFAFWYTRRTPGVRTQTSYEDNIKKIVDFSSVEGFWVSYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDFGDNICGAVLSIRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRGAIILLPLFSVFPNPSSPMADKGSGSSSSSMISATSIEAQINPYFLHHSFGSSSVLVSQPLLGAINYTSWSRAMRMVISGKNKLGFITGKISKPTVEGPMLEAWECNNDIIASWILNSVSKEIAASIVYTGSVQAVWNELRDRFKQASGPGIYQLRKDLVTLRQGSMTIEVYYTKLKTIWQDLSDHRPTASCTCGGLKPFLEHLDS 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21140341 21157131 + Lag0022205.1 Lac7g1688 614589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1688 448 FunFam Eukaryotic translation initiation factor NCBP 36 236 - -
Lac7g1688 448 ProSitePatterns Eukaryotic initiation factor 4E signature. 121 144 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Lac7g1688 448 Pfam gag-polypeptide of LTR copia-type 289 337 IPR029472 -
Lac7g1688 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 36 238 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Lac7g1688 448 Pfam Retrotransposon gag protein 351 428 IPR005162 -
Lac7g1688 448 SUPERFAMILY eIF4e-like 50 239 IPR023398 -
Lac7g1688 448 Gene3D RNA Cap, Translation Initiation Factor Eif4e 36 236 IPR023398 -
Lac7g1688 448 Pfam Eukaryotic initiation factor 4E 65 223 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g1688 Lac-Chr7:21140341 Lac10g0642 Lac-Chr10:4959994 5.30E-94 dispersed
Lac10g1005 Lac-Chr10:8072355 Lac7g1688 Lac-Chr7:21140341 3.60E-28 transposed
Lac12g2125 Lac-Chr12:38404335 Lac7g1688 Lac-Chr7:21140341 8.00E-26 transposed
Lac10g1748 Lac-Chr10:20731332 Lac7g1688 Lac-Chr7:21140341 9.80E-32 wgd
Lac12g1693 Lac-Chr12:32728558 Lac7g1688 Lac-Chr7:21140341 3.40E-30 wgd
Lac7g1688 Lac-Chr7:21140341 Lac7g2499 Lac-Chr7:42944056 1.40E-22 wgd
Lac7g1688 Lac-Chr7:21140341 Lac7g1858 Lac-Chr7:26217175 1.90E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1688 K03259 - csv:101204290 449.129