Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1748 ATGGCACTTGATAATGTTTTGAAGGATTCCTTCGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGCTCCTACTAGGGCAGGGGATCTGGGCTTGGAGGATTTTTTCAAAAAGGTTCAAGATATTGAAAAGCAGAATGAGAAGCTGGATAGGCTACTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAGGATGTCGATGAAGTTGGAAAAGTTGCACGTTTCGTGAAAACCAAAGTCGAAGAACTCGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGAGTAGATAGATCAAGAACAGCAACTACTCTACTTCCAAACACGAAACACCATAAGTTTAAGGAGTTCCCTCGAGGTTACTTCATTGGCCAATCACCCTTACTTGGTACAATTCCACCAAGCCGAAACCACCTAGGCTCCTTGTTAAGATTTTGGGCTGAACTATTAAGGGCAACTATCAAAAACTTGGAAAGTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATCTTACGTGAAAAAATCCATCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCACTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAGCAGATTTTCCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTAGAGAGGAAGTTACTCGAGCTACAGCAGGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGAAAATGGATGTGCATTGCCATCATAATCCTTTTAATCATCGTTGTGGTCGTAGTAGTGGGAGTCCTTAAGCCTTGGAATAATGGGTCAGGCGCTGATGAGCACATTGAACTATCCATGTGGTTGGAAGCCTATCATCAGTTCATTCAAGCTGGCATTTTGAGAGCCCTCACAGCCCAGGCACAACGACGCAATTATCAGGGGTGTGCTCTACCACTGAGCTAA 1155 44.76 MALDNVLKDSFEIPRGQPSRGGDIELGTNAPTRAGDLGLEDFFKKVQDIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKTKVEELDRENLANRQRPGCGKGSGVDRSRTATTLLPNTKHHKFKEFPRGYFIGQSPLLGTIPPSRNHLGSLLRFWAELLRATIKNLESALKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGTRADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVVVVGVLKPWNNGSGADEHIELSMWLEAYHQFIQAGILRALTAQAQRRNYQGCALPLS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22426023 22438246 - Lag0022265.1 Lac7g1748 614649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1748 384 Pfam SNARE domain 285 329 IPR000727 -
Lac7g1748 384 MobiDBLite consensus disorder prediction 1 31 - -
Lac7g1748 384 Coils Coil 177 197 - -
Lac7g1748 384 CDD SynN 39 250 IPR006011 GO:0016020(InterPro)
Lac7g1748 384 SUPERFAMILY t-snare proteins 39 286 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lac7g1748 384 Gene3D - 289 334 - -
Lac7g1748 384 Coils Coil 266 286 - -
Lac7g1748 384 PANTHER SYNTAXIN 188 286 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac7g1748 384 Coils Coil 39 73 - -
Lac7g1748 384 SMART SynN_4 34 214 IPR006011 GO:0016020(InterPro)
Lac7g1748 384 Pfam Syntaxin 185 286 IPR006011 GO:0016020(InterPro)
Lac7g1748 384 Pfam Syntaxin 41 134 IPR006011 GO:0016020(InterPro)
Lac7g1748 384 Gene3D - 37 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g1748 Lac-Chr7:22426023 Lac9g2066 Lac-Chr9:40297547 9.80E-57 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1748 K08486 - vvi:100265088 365.155