Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g1874 | ATGATGCAGCCGGATCAGAGCTCTGAGCTTTACAGATTCTTGGCCCAGAACGGAGCCTTCAGGCTGGGCGGCGGCGCCGGATCCTGCGGCTTTCCGGCGGCCCAAAGCTTGTCGAGCTCATCCTCTTATTACCCTTTGGATCAGTCGGCGGCGGCCGCCACTGAGCCACCGCTGCCGTCGCCCCATGACAGAGCCCTCGCCGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGTAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACCGACAAGGCATCGCTTCTGGCAAAAGTGGTTCAGCGAGTGAAAGAGCTGAAGCATCAGACCTCAGACATCGCAGAGCTCGAAACCTTCCCCTCGGAGACCGACGAGATCACAGTCCTCTCCGGCGAGCAATCCGACGACGGACGCCTCCTCTTCAAGGCGTCGCTGTGCTGCGAGGACCGCTCGGACCTCATCCCGGAGCTGAACGACATCCTCAACTCGCTCCAGCTGAAGACACTGAGGGCCGACATCGTCACTGTCGGCGGCAGAATCCGCAATGTTCTTCTGATCGCCGCCAACGACCACCACAGCGTCGAGTCCGTCCATTTTCTGCAGAACGCATTGAAGTCTCTCCTTGAACGGTCCAATTCTAGCGATAGATCCAAGAGGAGGCGTCTTGTAATTCACCACAAATGA | 714 | 56.86 | MMQPDQSSELYRFLAQNGAFRLGGGAGSCGFPAAQSLSSSSSYYPLDQSAAAATEPPLPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKHQTSDIAELETFPSETDEITVLSGEQSDDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTLRADIVTVGGRIRNVLLIAANDHHSVESVHFLQNALKSLLERSNSSDRSKRRRLVIHHK | 237 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 26802790 | 26805460 | + | Lag0022391.1 | Lac7g1874 | 614775 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g1874 | 237 | CDD | bHLH_AtAIG1_like | 63 | 138 | - | - | |
| Lac7g1874 | 237 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 67 | 116 | IPR011598 | GO:0046983(InterPro) | |
| Lac7g1874 | 237 | Gene3D | - | 63 | 127 | IPR036638 | GO:0046983(InterPro) | |
| Lac7g1874 | 237 | SMART | finulus | 73 | 122 | IPR011598 | GO:0046983(InterPro) | |
| Lac7g1874 | 237 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 49 | 234 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac7g1874 | 237 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 71 | 126 | IPR036638 | GO:0046983(InterPro) | |
| Lac7g1874 | 237 | FunFam | transcription factor bHLH30 | 62 | 125 | - | - | |
| Lac7g1874 | 237 | Pfam | Helix-loop-helix DNA-binding domain | 71 | 117 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0455 | Lac-Chr13:3277213 | Lac7g1874 | Lac-Chr7:26802790 | 3.30E-38 | dispersed | |
| Lac1g2783 | Lac-Chr1:48944651 | Lac7g1874 | Lac-Chr7:26802790 | 1.80E-14 | dispersed | |
| Lac6g1009 | Lac-Chr6:9237998 | Lac7g1874 | Lac-Chr7:26802790 | 3.70E-25 | dispersed | |
| Lac7g1874 | Lac-Chr7:26802790 | Lac8g2877 | Lac-Chr8:45904850 | 1.00E-27 | dispersed | |
| Lac7g1874 | Lac-Chr7:26802790 | Lac10g0940 | Lac-Chr10:7480773 | 2.20E-30 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24195 | PF00010 | HLH | 1.10E-11 | No_clan | Lac | TF |
Pathway information