Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1919 ATGCTAAAAGTACCTCAGGCTCAATACATTTCAAAACTTATTAAAATATCTGGAATCACAATCGTTGCGTCAAGGACCAAGGCAAAGGCAACATATGTGACCTTAATGTGCAAAAACGGTAGAAGTACACAAAGAGTTCCATGTCGACCTGGACTTGGAGGGGCGATTGTCCCTCGATCATGTAATCATATACCTCAGGTTGGAGAAGAACCTTGCCCATTGGATCCTTGGATTGTGGTTCCTGGTAAGAGCATGTATGTTGATCAACAGACTTTAAAACTGCAGGAAAACCCAAAACAAGTAACATTGTTTCTTCTGGATTTTGAAGGATGTACCACTGGGGAACTTCTTAGGAACATGCTTCTATCAGTAGATTGCCATCTTGTTCAAACAACTGTTCCAGGTACTAGATTGACCATCATGGGGATATACAGTATTTATCAAGCTGCCAATTCTTCCGCATCCCACAAAGGAGCAGTTGCAATCAGACAACCTTATATCAGGGTTTCCCCAAAGTTGCATGTTGATAGCACGTCCTTTCAGTTTATGCACATCTGGTTAGTGTCGATGAGGCAAGTCTCATTTACTATTGCATATGGAAAATTCACAGATGAAGAGTTCCAAAAATTTACAGTAGAGTCTGATGTCTATAAAAGCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGATGATGTGAAGAAGGTCGTGGCTTGTCTTCTATTTGGAGGATCCAGGAAGTTTCTCAAGTTTGTTGAGAAGACAACTCCAGTTGTTGTCTATACTTCTGGAAAAGGTTCATCGGCTGCTGGTCTTATAACTTCAGTGATACGAGATATCAGCTCTCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGTGGTGTTATCTGCATTGATGGGTTTGACAAAATGAGATCAGAAGATAGAGTTGCAATTCATGAAGCGATGGAACAACAGACAATATCAATTGCTAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTTAGTGCTTGCGGCTGCTAATCCTCCATCGGGACGTTATGATGATCTTAGATTCCTTATTCACGGCACAGGATAA 1098 40.89 MLKVPQAQYISKLIKISGITIVASRTKAKATYVTLMCKNGRSTQRVPCRPGLGGAIVPRSCNHIPQVGEEPCPLDPWIVVPGKSMYVDQQTLKLQENPKQVTLFLLDFEGCTTGELLRNMLLSVDCHLVQTTVPGTRLTIMGIYSIYQAANSSASHKGAVAIRQPYIRVSPKLHVDSTSFQFMHIWLVSMRQVSFTIAYGKFTDEEFQKFTVESDVYKSICSKIAPSIFGHDDVKKVVACLLFGGSRKFLKFVEKTTPVVVYTSGKGSSAAGLITSVIRDISSREFYLEGGAMVLADGGVICIDGFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTLVLAAANPPSGRYDDLRFLIHGTG 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28638726 28641126 - Lag0022436.1 Lac7g1919 614820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1919 365 SMART mcm 2 364 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac7g1919 365 Gene3D - 29 87 - -
Lac7g1919 365 Pfam MCM OB domain 7 147 IPR033762 -
Lac7g1919 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 351 IPR027417 -
Lac7g1919 365 Gene3D - 7 147 IPR012340 -
Lac7g1919 365 Gene3D - 201 362 IPR027417 -
Lac7g1919 365 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 248 356 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)
Lac7g1919 365 SUPERFAMILY Nucleic acid-binding proteins 7 169 IPR012340 -
Lac7g1919 365 PRINTS Mini-chromosome maintenance (MCM) protein family signature 291 305 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac7g1919 365 PRINTS Mini-chromosome maintenance (MCM) protein family signature 319 332 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac7g1919 365 PRINTS Mini-chromosome maintenance (MCM) protein family signature 343 355 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac7g1919 365 ProSiteProfiles MCM family domain profile. 216 365 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac7g1919 365 FunFam DNA helicase 29 87 - -
Lac7g1919 365 Pfam MCM P-loop domain 248 357 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2877 Lac-Chr6:46398013 Lac7g1919 Lac-Chr7:28638726 1.20E-146 transposed
Lac7g1551 Lac-Chr7:17284273 Lac7g1919 Lac-Chr7:28638726 1.30E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1919 K02209 - csv:101211822 513.457