Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g2071 | ATGTCATTGGAGCGGTATCTAAAGGACTTCGAGGTTGAGCACAAACATCCTTCAGAGGAAGCCTTGAGGAGGTGGAGATCTGCCGTCTCCATCGTCAGAAATCGACGCCGGAGGTTCCGAAATGTTGCAGATCTCGTCAAACGCTCTGAGGCTGAGAAGAAGAAGCTCAAAATCCAGGAAAAAATTCGAGTTGCTTTGTATGTTCAGAAAGCAGCATTACAGTTTATTGATGCCGTAAATCGGGAGGAGTACCATCTGTCAGATGAGGCTAGGAATGCTGGCTATAATATTCATCCAGATGAGCTTGCAGCCATAGTCCGTAGCCATGATCATAAGGCATTCAGATTCCATGGTGGTGTTGAAGGACTTTCAAGGAAAGTTTCTGTTTCTCTAGATGCAGGTGTTAGTAAAAAGGATACGCCCAAGAGACAAGAGATTTATGGTTATAATCGTTACACCGAGAAACCTTCCAGATCCTTTTTGGTGTTTGTATGGGAAGCACTACATGATTTGACGTTAATCATCCTAACAGTTTGTGCACTAATTTCTTTAGGCGTTGGATTTGCCACCGAAGGATGGCCAAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATAGTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAAGGATCTTGACCGGGAGAAGCAAAAAATTTATGTTGATGTCACTAGGGATGGGCTTAGGGAAAAAGTTTTGATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGAGATCAGGTTCCTGCTGATGGAGTTTTCATATCAGGATATAGTCTGCTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAATGTAGATGAGGAGAAACCATTTCTTCTTTCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGCATGAGAACTGAATGGGGAAAATTGATGGAAACTCTCAGCGAGGGAGGAGATGATGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTTATGACAGGAAGGTTTCTCTGGGAAAAGGCTGCTCACCATCAATTTACCAAGTGGACTTCAAGTGATGCATTAAAACTCTTAGATTTCTTTGCCATTGCAGTTACCATAATAGTCGTCGCAGTTCCTGAAGGTTTACCGCTGGCAGTGACATTGAGCCTTGCATTTGCCATGAAGAAATTGATGGCTGAAAGGGCACTAGTTAGGCATCTGTCTGCATGTGAGACGATGGGTTCAGCTAGTTGCATCTGCACAGATAAGACAGGGACGTTAACTACAAATCATATGATAGTGAGCCGTGCATGGATTTGTGAAAACTTTATGGAGAATAAAGACCATGAGAGTGTAGACAAATTGAAATCAGAGATCTCTAAAGACGTTTTAGGCATATTATTGCAGTCCATATTTCAAAATACTAGCTGTGAAGTGACTAAAGATAAAGACGGGCAGAACGCAATTGTTGGTGGAACACCAACGGAATCAGCAATATTAGAGTTTGGCTTGCATTTGGGTGGAGATTTTCATGCCCAAAGTGTAGAATATAAGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGAAAGAAGATGTCTGTACTTGTGGCTCTTCCTAGTGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAAGTTTATTGATTCCAATGGAGAATCTATGGACTTAACAGAAGAGAAGGTAAAGAATGCTACAAATGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACGCTTTGCTTGGCCTTCAAAGATATAGAGGAGTCCGGTGATAAATGTATTCCAGATGCTGGATACACATTAATTGCAGTTGTTGGAATCAAGGACCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAGCAGCTGGAATAACTGTCCGTATGGTCACTGGTGACAATATTAATACAGCAAAGGCTATTGCTAAGGAATGTGGTATACTTACAGCTGATGGTTTAGCTATAGAAGGACCAGACTTCCGTAATTTATCCTCAGAGCAGATGAAGGAAGTTATACCAAAACTCCAGGTAATGGCTCGGTCCTTGCCACTGGACAAATACACATTGGTTAACAATTTGCGAAGTATGTTTGATGAGGTTGTTGCAGTGACTGGCGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGGCTAGCCATGGGCATTGCTGGCACCGAGGTGGCCAAGGAAAATGCCGATGTCATCATAATGGATGACAATTTTTCAACCATTGTAAATGTTGCGAGATGGGGACGTGCTGTGTATATTAACATACAAAAGTTTGTGCAGTTTCAACTAACAGTTAACATTGTTGCTCTAGTGATCAATTTTGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCGAATGATGGACTTATGCAGAGACCCCCAATTCCCAAGGGGGTTAGCTTCATTACCAACGCCATGTGGAGGAATATTATTGGTCAGAGTATCTATCAACTTGTTGTTCTTGCAGTTCTTAACTTTGGGGGAAAGCAACTTCTTGGACTTAGTGGATCCGATTCCACAAAAGTTCTCAACACTTTGATATTTAACTCATTCGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATAGAGAAGATCAACATCCTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTATCCACAGTGGCTTTCCAAATAATAATTGTTGAACTTTTGGGTGCTTTCGCAAGCACTGTACCACTGAGCTGGGAACTGTGGGGACTGAGCGTGGTGATTGGATTTGTGAGCATGCCAGTTGCAGTTGTGTTGAAGTTCATCCCTGTTGGTAAAGATAAAGAAGTAGCATACACAGCCCATCATGATGGCTACGAACGACTCCCTTCTGGCCCAGAGCGGGTTTGA | 3117 | 42.41 | MSLERYLKDFEVEHKHPSEEALRRWRSAVSIVRNRRRRFRNVADLVKRSEAEKKKLKIQEKIRVALYVQKAALQFIDAVNREEYHLSDEARNAGYNIHPDELAAIVRSHDHKAFRFHGGVEGLSRKVSVSLDAGVSKKDTPKRQEIYGYNRYTEKPSRSFLVFVWEALHDLTLIILTVCALISLGVGFATEGWPKGTYDGLGILLSIVLVVLVTSISDYKQSLQFKDLDREKQKIYVDVTRDGLREKVLIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNVDEEKPFLLSGTKVQDGSGKMMVTTVGMRTEWGKLMETLSEGGDDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLWEKAAHHQFTKWTSSDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMAERALVRHLSACETMGSASCICTDKTGTLTTNHMIVSRAWICENFMENKDHESVDKLKSEISKDVLGILLQSIFQNTSCEVTKDKDGQNAIVGGTPTESAILEFGLHLGGDFHAQSVEYKILKVEPFNSVRKKMSVLVALPSGGVRAFVKGASEIILSMCDKFIDSNGESMDLTEEKVKNATNVINSFANEALRTLCLAFKDIEESGDKCIPDAGYTLIAVVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTADGLAIEGPDFRNLSSEQMKEVIPKLQVMARSLPLDKYTLVNNLRSMFDEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVSFITNAMWRNIIGQSIYQLVVLAVLNFGGKQLLGLSGSDSTKVLNTLIFNSFVFCQVFNEINSREIEKINILRGMFSSWIFLGVMVSTVAFQIIIVELLGAFASTVPLSWELWGLSVVIGFVSMPVAVVLKFIPVGKDKEVAYTAHHDGYERLPSGPERV | 1038 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 33809960 | 33821486 | - | Lag0022588.1 | Lac7g2071 | 614972 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g2071 | 1038 | Pfam | Cation transporter/ATPase, N-terminus | 117 | 183 | IPR004014 | - | |
| Lac7g2071 | 1038 | FunFam | Calcium-transporting ATPase | 649 | 797 | - | - | |
| Lac7g2071 | 1038 | Gene3D | - | 17 | 78 | - | - | |
| Lac7g2071 | 1038 | FunFam | Calcium-transporting ATPase | 213 | 334 | - | - | |
| Lac7g2071 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 451 | 465 | - | - | |
| Lac7g2071 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 649 | 660 | - | - | |
| Lac7g2071 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 282 | 296 | - | - | |
| Lac7g2071 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 671 | 681 | - | - | |
| Lac7g2071 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 776 | 788 | - | - | |
| Lac7g2071 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 752 | 771 | - | - | |
| Lac7g2071 | 1038 | PANTHER | CATION TRANSPORTING ATPASE | 77 | 1013 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lac7g2071 | 1038 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 117 | 1013 | IPR023298 | - | |
| Lac7g2071 | 1038 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 457 | 661 | IPR023299 | GO:0000166(InterPro) | |
| Lac7g2071 | 1038 | Gene3D | - | 134 | 334 | - | - | |
| Lac7g2071 | 1038 | FunFam | Calcium-transporting ATPase | 769 | 1015 | - | - | |
| Lac7g2071 | 1038 | SMART | Cation_ATPase_N_a_2 | 93 | 188 | IPR004014 | - | |
| Lac7g2071 | 1038 | SFLD | p-type atpase | 433 | 804 | IPR044492 | - | |
| Lac7g2071 | 1038 | FunFam | Calcium-transporting ATPase | 461 | 656 | - | - | |
| Lac7g2071 | 1038 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
| Lac7g2071 | 1038 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 107 | 1013 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lac7g2071 | 1038 | Pfam | Cation transporting ATPase, C-terminus | 837 | 1011 | IPR006068 | - | |
| Lac7g2071 | 1038 | Pfam | Cation transport ATPase (P-type) | 507 | 591 | - | - | |
| Lac7g2071 | 1038 | NCBIfam | HAD-IC family P-type ATPase | 203 | 480 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac7g2071 | 1038 | NCBIfam | HAD-IC family P-type ATPase | 717 | 840 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac7g2071 | 1038 | SFLD | Haloacid Dehalogenase | 433 | 804 | - | - | |
| Lac7g2071 | 1038 | Coils | Coil | 600 | 620 | - | - | |
| Lac7g2071 | 1038 | Gene3D | - | 461 | 656 | IPR023299 | GO:0000166(InterPro) | |
| Lac7g2071 | 1038 | Gene3D | - | 166 | 1011 | - | - | |
| Lac7g2071 | 1038 | Gene3D | - | 448 | 797 | IPR023214 | - | |
| Lac7g2071 | 1038 | SUPERFAMILY | Calcium ATPase, transduction domain A | 235 | 332 | IPR008250 | - | |
| Lac7g2071 | 1038 | CDD | P-type_ATPase_Ca_PMCA-like | 142 | 885 | - | - | |
| Lac7g2071 | 1038 | SUPERFAMILY | HAD-like | 450 | 857 | IPR036412 | - | |
| Lac7g2071 | 1038 | PRINTS | H+-transporting ATPase (proton pump) signature | 752 | 768 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac7g2071 | 1038 | PRINTS | H+-transporting ATPase (proton pump) signature | 784 | 809 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac7g2071 | 1038 | PRINTS | H+-transporting ATPase (proton pump) signature | 610 | 628 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac7g2071 | 1038 | Pfam | haloacid dehalogenase-like hydrolase | 642 | 764 | - | - | |
| Lac7g2071 | 1038 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 453 | 459 | IPR018303 | - | |
| Lac7g2071 | 1038 | Pfam | E1-E2 ATPase | 233 | 429 | - | - | |
| Lac7g2071 | 1038 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 8 | 50 | IPR024750 | GO:0005516(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g0394 | Lac-Chr2:2889004 | Lac7g2071 | Lac-Chr7:33809960 | 0.00E+00 | dispersed | |
| Lac7g2071 | Lac-Chr7:33809960 | Lac8g2014 | Lac-Chr8:38602625 | 0.00E+00 | dispersed | |
| Lac7g2071 | Lac-Chr7:33809960 | Lac1g2669 | Lac-Chr1:47943291 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac7g2071 | K01537 | - | csv:101206199 | 1784.62 |