Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2109 ATGAGGGGGGAAGACGTGGCCTGCAAGACAGTAAACCTGCACACCGGTGTGGTGCTCGCCACACCGGCTCCGATGCTTAAGTCAGCAAACAGAACGGTCGGGAGTGGAAAAGTAAGAGCAAGAGGAGAGAGTAGAAAATATAGGATAGTGTTTAGGGATAGAATTCGGGATCCCTTCGGCCTTGGCCCGTCCCGCATGCCGGCTCCGCCTCCTTGGCCCGTATCCCAGCCCGATTTCTCCCCGGTTGTCTTCGTCAGCTCCTCGCATAGATGGACTGGTCGTTATGAAGCTCATCTATGGGATAAAAGTACTTGGAACCAGAACCAGAATAAGAAGGGGAAGCAAGGAGCATATGATGAAGAAGAAGCAGCTGCTAGGGCATACGATTTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGAGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTCAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCTAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTTGGTCGTATGCCGGGCCCTGATTACGTCAACAGCTTAAATTATGGTGCTGGAGATGATCAAGCTACAGAAACCGAATTCGTCCACAGCTTCTGCATTGAAAGGAAGATTGACTTAACTAGTCACATTAAGTGGTGGGGCCCCAACAAAACTCGAACAGCCAATGCTGGCTCAAAGTCATCAGAAGAAGACAAACATAGTTGCGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTTGGACAAACCGCCCGTCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCGGCGGCCTACAAGAGTTTGCAGGAGAAAGCTTCGAAGTTACAGGAAATTAACAACGAGAATGATGAAAACGAAAATAAAAACACTGTTAACAAGATAGATCATGGGAAAGCGGTCGAAACACATACAAGTCATGGTGGTGGTGATCCCAGCGAGAGATATGGGGTTGCTTTTGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCTTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCTCTTGTTTCTGTTCTTCCTACCGGGCTTTCTCGTACATCCGAGGTTACAAAGACTGAAACCTCTTCAACTTACACTTTGTTTGGGCCTGAGGAATAA 1314 46.88 MRGEDVACKTVNLHTGVVLATPAPMLKSANRTVGSGKVRARGESRKYRIVFRDRIRDPFGLGPSRMPAPPPWPVSQPDFSPVVFVSSSHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSFGRMPGPDYVNSLNYGAGDDQATETEFVHSFCIERKIDLTSHIKWWGPNKTRTANAGSKSSEEDKHSCAGEVGSELKALGQTARPTEPYEMPCLGTLHGVKKVASKVSALSILSRSAAYKSLQEKASKLQEINNENDENENKNTVNKIDHGKAVETHTSHGGGDPSERYGVAFGTSGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTSEVTKTETSSTYTLFGPEE 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34611476 34616176 - Lag0022626.1 Lac7g2109 615010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2109 437 MobiDBLite consensus disorder prediction 322 349 - -
Lac7g2109 437 MobiDBLite consensus disorder prediction 322 361 - -
Lac7g2109 437 SUPERFAMILY DNA-binding domain 89 146 IPR016177 GO:0003677(InterPro)
Lac7g2109 437 Gene3D AP2/ERF domain 84 147 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g2109 437 Coils Coil 311 334 - -
Lac7g2109 437 SMART rav1_2 89 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g2109 437 ProSiteProfiles AP2/ERF domain profile. 78 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g2109 437 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 44 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2109 Lac-Chr7:34611476 Lac8g0535 Lac-Chr8:7699221 2.20E-44 dispersed
Lac5g1174 Lac-Chr5:20669382 Lac7g2109 Lac-Chr7:34611476 2.10E-27 wgd
Lac7g2109 Lac-Chr7:34611476 Lac9g1073 Lac-Chr9:25356951 2.20E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24200 PF00847 AP2 2.50E-05 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2109 K09285 - csv:101206434 619.387