Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2139 ATGGCCGATGCTCACCAATTGCCCCGCCGGAAAGCCCTTGGGAAGCGTGCCTCCGCTGCCGACCCCGACCGCGACTCCGACTCCGCTACCGCTGCTGCCATCGGGGCCGCCCCGGCTCCCTGTGGCGCTTGCAAGTTTCTCAGGAGAAAATGCGTCAATGGCTGCATCTTTGCACCGCATTTCGCCTCCGATCAAGGCGCCGCTCGCTTCGCCGCCGTGCATAAGGTCTTCGGAGCGAGTAACGTGTCCAAGCTGCTGCTGCATATTCCGGTCAGCCGCCGAAACGACGCCGTCGTCACCATTTCCTATGAGGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTGCAACAACAGGTGGCATCTCTGCAGGCGGAGCTTGCCGCGGTTCAAACTCAATTGATAAGCAGCAGGTTGGCATTTGCAACTGCAATTCAAAACTCACAGCCACCCCAAGTCAGAGTGCTGCAGCCCGCTTACTCGAACAACTCTTCCATCTCCGTCTCCGCCTCCACCTCCGCTCATAATGCGATCAATTTGAGTAGTTTTGCTTCAAATTACGACCTCCCGACCGAGACTGCCCCATCTCCCCATCACTTAGAGCCTCTTCACCTATCCCACCAATCGATCGAAGAGGAGGAAGACGAGGAAAATAGCCAGTTACCCACCATCTTCACCGACGAGTTACTCCGCCAGAGATGA 723 57.12 MADAHQLPRRKALGKRASAADPDRDSDSATAAAIGAAPAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQTQLISSRLAFATAIQNSQPPQVRVLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLSHQSIEEEEDEENSQLPTIFTDELLRQR 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35070905 35077249 - Lag0022656.1 Lac7g2139 615040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2139 240 MobiDBLite consensus disorder prediction 1 26 - -
Lac7g2139 240 ProSiteProfiles LOB domain profile. 39 141 IPR004883 -
Lac7g2139 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 38 221 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Lac7g2139 240 MobiDBLite consensus disorder prediction 1 23 - -
Lac7g2139 240 Pfam Lateral organ boundaries (LOB) domain 40 138 IPR004883 -
Lac7g2139 240 Coils Coil 120 140 - -
Lac7g2139 240 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0319 Lac-Chr7:2464212 Lac7g2139 Lac-Chr7:35070905 2.70E-38 dispersed
Lac7g2139 Lac-Chr7:35070905 Lac9g2362 Lac-Chr9:42835271 7.80E-28 dispersed
Lac7g2139 Lac-Chr7:35070905 Lac12g1883 Lac-Chr12:35332115 5.20E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24202 PF03195 LOB 1.50E-37 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2139 - - - 0.0