Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2289 ATGGCCATGGCTATGGCCCATCACAGAGAGAGTGGCGATGGGGGTATCAATGGCCACCTTGACAGCACCGGCAAGTATGTTCGATACACGACGGAGCAAGTGGAGGCTCTTGAGCGAGTCTATGCTGAATGTCCTAAACCGAGCTCCTTGCGCCGCCAGCAGCTGGTTCGTGACTGCCCTATTTTGGCCAACATCGAGCCCAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAGAAGCAGAGGAAAGAGGCTTCTCGTTTACAGTCATTAAACAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAACAAGTTTCTCAGCTCGTCTGTGAAAATGGGTATATGCGGCAACATTTGCAAACTGCTAATGCACCAGCAGCAACAACTAATGATGCCAATTGTGACTCAGTGGCTACTACCCCTCAACATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCCTGTCTATTGCAGAGGAGATTTTGGCAGCCTTCCTATCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCTGCTCGAGCCTGTGGTCTTGTCAGTTTAGAGCCCATGAAGATTGCAGAGATCCTAAAAGATCGCCCATCTTGGTTTCGTGATTGCCGGAGCCTTGAAGTCTTTACAATGTTTCCCACTGGTAATAGTGGGACAATTGAACTTGTATATACGCAGGTTTATGCTCCTACTACATTAGCACCTGCACGAGATTTTTGGACTCTCAGATACACCAAAACTTTGGAAAATGGCAATCTTGTGGTTTGTGAGAGATCACTGTCCGGATCTGGCACCGGGCCTAATGCAGCTTCTGCTGCTCAGTTTGTGAGAGCTGAAATGCTTCCCAGTGGCTATTTGATTCGTCCATGCGAGGGTGGAGGTTCGATCATCCACATTGTAGATCACCTGAATCTTGAGCCTTGGAGTGTACCAGAGGTAGTACGACCACTATACGAATCATCAAAGGCTGTGGCCCAGAAAATGACTATAGCAGCTCTTCGCTACATTAGGCAAATTGCTCAAGAGACAAGCGGCGAAGTAGTATACAGTTTAGGCAGGCAACCGGCCGTTCTTCGAACTTTTAGCCAAAGATTGAGCAGAGGATTTAATGATGCTGTAAATGGATTTAATGATGATGGATGGTCAATAATCAATTGTGATGGAGCTGAAGACGTGACTCTTGCCATAAATTCAAGAAAGAATCTGAATACATCATATGATCCAGTCAATTCTCTTGCATTCCATGGGGGTGTCCTTTGTGCTAAGGCTTCTATGCTTCTCCAAAACGTTCCTCCCATTGCTCTAATTCGTTTCTTGAGGGAGCATCGTTCCGAGTGGGCTGATTTCAATGTTGATGCCTATTCCGCTGCATCGTTAAAAACTGGTTCATACGCATACCCGGGCATGAGACCGACTAGGTTTACAGGGAGCCAAATCATCATGCCGCTTGGCCATACAATCGAACAAGAAGAGTTGCTTGAAGTTGTACGGCTTGAAAGTCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCCGGGACGTTCATCTCTTGCAGATGTGTAGTGGAATCGATGAGAATGCTGTTGGGGCGTGTTCCGAACTCGTGTTTGCTCCAATTGATGAGATGTTCCCTGATGATGCTGTGCTGCTGCCTTCTGGTTTCAGGATCATCCCATTACATTCTAAAACAGGTGACCCAAAAGATACATGGAACTCAAATAGAACTTTGGATCTCACTTCCAGTCTTGAAGTTGGCTCATCTGCTTCTCAAGATGCTACTGCATCAACATCGAACTTCAGGTCGGTCTTGACCATCGCTTTCCAGTTCCCGTTCGGTAGTAACCTGCAGGATGATGTTGCAGCGATGGCGAGACAGTATGTTCGGAGTGTTGTTTCAGCCGTGCAGAGGGTTGCAGTTGCCATATCTCCCTCTGGATTAAGCTCACCATCAGAACCAAAGCTATCATCTGCTTGTCCAGAGGCACTAACACTGGCTCGATGGATCTGCCATAGCTACAGATGCCATACAGGAACAGAATTGGTGGCATCAGACAGTGGGGATAGCGACTCAGTGTTGAAACATCTATGGAATCATCAGGATGCAATTCTCTGCTGTTCCCTCAAGTCGCTGCCCCCAGTGTTCATGTTTGCGAACCAAGCAGGCCTCGACATGTTGGAGACGACCTTGGTTGCCTTACAAGACATCACCTTGGATAAGATTCTTGGCGACTCGGCCCGCAAGGCTTTCTCTGCTGATTTTTCCAACTTAATGCACCAGGGCTTTGCTTACATTCCTGCTGGAATTTGCATGTCGACAATGGGGCGCCATGCTTCGTTTGAACAGGCCATTGCATGGAAAGTCCTTGCTGAAGATGAGTCTACTGTGCACTGTCTTGCCTTCTCCTTTGTCAACTGGTCGTTCCTGTGA 2538 47.75 MAMAMAHHRESGDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLQTANAPAATTNDANCDSVATTPQHSLRDASSPAGLLSIAEEILAAFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPMKIAEILKDRPSWFRDCRSLEVFTMFPTGNSGTIELVYTQVYAPTTLAPARDFWTLRYTKTLENGNLVVCERSLSGSGTGPNAASAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPWSVPEVVRPLYESSKAVAQKMTIAALRYIRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSIINCDGAEDVTLAINSRKNLNTSYDPVNSLAFHGGVLCAKASMLLQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYAYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFMSRDVHLLQMCSGIDENAVGACSELVFAPIDEMFPDDAVLLPSGFRIIPLHSKTGDPKDTWNSNRTLDLTSSLEVGSSASQDATASTSNFRSVLTIAFQFPFGSNLQDDVAAMARQYVRSVVSAVQRVAVAISPSGLSSPSEPKLSSACPEALTLARWICHSYRCHTGTELVASDSGDSDSVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKILGDSARKAFSADFSNLMHQGFAYIPAGICMSTMGRHASFEQAIAWKVLAEDESTVHCLAFSFVNWSFL 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38486348 38493474 - Lag0022806.1 Lac7g2289 615190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2289 845 Pfam START domain 167 375 IPR002913 GO:0008289(InterPro)
Lac7g2289 845 CDD START_ArGLABRA2_like 161 377 - -
Lac7g2289 845 Gene3D - 202 383 IPR023393 -
Lac7g2289 845 Gene3D - 19 91 - -
Lac7g2289 845 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Lac7g2289 845 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Lac7g2289 845 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Lac7g2289 845 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Lac7g2289 845 Pfam MEKHLA domain 700 844 IPR013978 -
Lac7g2289 845 Coils Coil 90 121 - -
Lac7g2289 845 SUPERFAMILY Bet v1-like 166 378 - -
Lac7g2289 845 CDD bZIP 77 116 - -
Lac7g2289 845 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Lac7g2289 845 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Lac7g2289 845 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Lac7g2289 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 845 IPR044830 GO:0003700(InterPro)
Lac7g2289 845 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2289 Lac-Chr7:38486348 Lac5g0223 Lac-Chr5:2007748 2.10E-06 dispersed
Lac9g2585 Lac-Chr9:44396202 Lac7g2289 Lac-Chr7:38486348 0.00E+00 transposed
Lac6g1804 Lac-Chr6:29563280 Lac7g2289 Lac-Chr7:38486348 1.90E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24204 PF01852 START 8.60E-48 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2289 K09338 - rcu:8266275 1373.22