Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2385 ATGCTGTGGACCGACCCTGCAAATTTTTGGGCGGACGTATACCAAGAAGACGAAGAAGAACTAAAAGTAGAACAAGAAGAAGAAGAAGAAGAAGAAGATCTGCTTTCCGTTAGGTCTAGAGGTTATCAACTTCAACTTGGTTGCAGGCTCTCATGGTGGATGGAACATAGTTATGGGTTTGAACAACATGTTGCTCAGCAAAGCCGGCGTGATAAGCTAAGAGTTCCGCAGAATTACTTGCGAGTAGTGGGGGAATTATCCAGAAACTCCGATGAACAATTGAGTTTTCACAACTCGGAGCATTCGGGGCTTGATCTGGATCTTGTTCGAATTCAAAGTTTTAATAAGAATGCGGGTTTGCCTCATGACTTGTCTTCGTTACCCTCAGAAATGATCAATTTCTCGAGAGATTCCAACGTCTTATCGGACCAAAGGGAAATAATGTTGCGTCAAGAACTAGAAGACCCAGCTCAATGCAGAAGGCAAATTGTGGTAGATGGTTCATTGGGTTCTTTTTCCAATTCTTTGTTGAAAGCCTCTGGTGAAGTTGTAAATAATGGTGGTGATTATTGGAAAAGCTCTCAGCAAAGCTGTGATTGGGTAGTGAACTGCGGAAGTAATTCTTTGGGAGGTGAAATGTTGAGTGAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAAATTGCATTGGATTCCAAACTTCAACTTCTTTTAATAATCCATCCCACGAAACATTCAGTCAGGACGGACAAAAGCGTATAGGAGGAGAATTGTTGCCTCCAATTTACCAGAATACCCTTCAGGATGTTGTTACATCAGCCTCTATTGGAACTCAGGACCTGGAAATGACATCGATTGTGCAGCATAATTTTACTGAAATTAACCAAACTGCTGCTTGTGAAGGCAGTGGAAATGAGCTTGCTCTTCTTCCAGTTTACAGGGATCAGCCAAATGTGTTGCCTTATGACAGTAATGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAATTGGGTTCTATTGCGAGAAAAACTGATGAAGAATTGAGAACTTTTATGAGTGATTCCAATCCACAAGGTCTATCGCTGTCGCTTTCTTCGAATCCGCCGTCCAAATTGCCCACCACTCAGTTTGAAGAATCAGAGGAATTACAGGAAAGTATCACTGTGTTAAAAAATCCCCAAGAATCCAAAACAGTCAAGTTTGAGAATTTGTGTAGATTACCAAAGCCGACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTTTGAACACATATAGAAACACAGGTCCTCTTGGTCCCTTTACTGGGTATGCGACCATTTTAAAGAGTTCAAAGTTCTTGAAACCTGCCCAACTATTGTTAGACGAATTTTGTGGCTCAAATGGTCAAAAGTTTGTCCAACCGTGTGAGGTATTTGAGAAGACATCTGGGGAAGTAGGTGCCTCAGCGGCCCTAAGTGCATTTAGAAATGAGGTTGTTAAGGAAAATAGTTCATGTGCTGAAGCCTCGACGTTCTGCGGTTCGAATGAAACAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTATATATGCTAGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCATTTGAATCCGTTGCTGGTCTTAGTTCTGCCACACCCTACATTTCCCTTGCGCTCAAGACAGTCTCGAGACACTTTCGATGTCTGAAGAATGCCATCTCGGAACAATTAAAGTATCTGAGGAAGGTATTGGGTGAGGATTTGTCATCCCCCTCTGCAGGGACAAGCGGCAGCAAAGGCGATGCAAATTCGGCTAGGTTGAAATACATGGAACAGAGCTTCCAAAAGCAGAAATCTGGCATTGTAAATATGGGATTCCTCGAATCCCAACATGTGTGGAGGCCGCAGAGAGGTTTGCCAGAACGTGCTGTGGCAATTCTTAGGGCCTGGCTCTTTGAGCATTTTCTTCACCCGTACCCCACGGACACAGATAAACATATGCTAGCCACTCAAACAGGCCTATCTCGGAACCAGGTGTCGAATTGGTTCATAAATGCCCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACAACAAAAGCCATGGTATGAAAGATGGTAGTTCTACAATAGAAAACACGACCGGTTGGACCAGTAGTGAACAACAGCCTTTAAAGGACCATGGTGTTGTAAATGAAATGGCTAGTCATCATTTTCAGTGCTTGGGGATGGATTCCTCAAGTGGCGATAGAAATGGACTAAGCAGCAGCGACCAACAGTGGAATCAAGACAAACAATCCAAATTGGACAATGGAGTTCAGTCCAACATGGAAGGGGAATTGATGGGGTTCATGCCATATCGGGCCAGCGCGATTGATGTTGGAGGACTCGGAGCTGTCTCTCTAACATTAGGCCTTCGCCACCGAGTCGAGAGTGCCCACCATCAACAGCAACGGCACCAATTGCAGCAGCAAGATGACCAACTAATACGCCACTATGGAGGAGAAATGATCCATGATTTTGTGGGGTAA 2667 43.53 MLWTDPANFWADVYQEDEEELKVEQEEEEEEEDLLSVRSRGYQLQLGCRLSWWMEHSYGFEQHVAQQSRRDKLRVPQNYLRVVGELSRNSDEQLSFHNSEHSGLDLDLVRIQSFNKNAGLPHDLSSLPSEMINFSRDSNVLSDQREIMLRQELEDPAQCRRQIVVDGSLGSFSNSLLKASGEVVNNGGDYWKSSQQSCDWVVNCGSNSLGGEMLSEEVTDSTVYSLKPNCIGFQTSTSFNNPSHETFSQDGQKRIGGELLPPIYQNTLQDVVTSASIGTQDLEMTSIVQHNFTEINQTAACEGSGNELALLPVYRDQPNVLPYDSNGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLSLSLSSNPPSKLPTTQFEESEELQESITVLKNPQESKTVKFENLCRLPKPTSIGNKNYGKSLQDVMGVPLNTYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSNGQKFVQPCEVFEKTSGEVGASAALSAFRNEVVKENSSCAEASTFCGSNETNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRCLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSARLKYMEQSFQKQKSGIVNMGFLESQHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGMKDGSSTIENTTGWTSSEQQPLKDHGVVNEMASHHFQCLGMDSSSGDRNGLSSSDQQWNQDKQSKLDNGVQSNMEGELMGFMPYRASAIDVGGLGAVSLTLGLRHRVESAHHQQQRHQLQQQDDQLIRHYGGEMIHDFVG 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40457944 40463317 - Lag0022902.1 Lac7g2385 615286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2385 888 Coils Coil 11 34 - -
Lac7g2385 888 SUPERFAMILY Homeodomain-like 668 732 IPR009057 -
Lac7g2385 888 MobiDBLite consensus disorder prediction 787 816 - -
Lac7g2385 888 Pfam Associated with HOX 455 607 IPR006563 -
Lac7g2385 888 ProSiteProfiles 'Homeobox' domain profile. 663 726 IPR001356 GO:0003677(InterPro)
Lac7g2385 888 Pfam Homeobox KN domain 683 722 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac7g2385 888 CDD homeodomain 666 727 IPR001356 GO:0003677(InterPro)
Lac7g2385 888 MobiDBLite consensus disorder prediction 361 381 - -
Lac7g2385 888 FunFam BEL1-like homeodomain protein 9 669 731 - -
Lac7g2385 888 SMART prehox3 450 608 IPR006563 -
Lac7g2385 888 SMART HOX_1 666 730 IPR001356 GO:0003677(InterPro)
Lac7g2385 888 Gene3D - 669 731 - -
Lac7g2385 888 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 374 766 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2385 Lac-Chr7:40457944 Lac9g1723 Lac-Chr9:36821664 7.30E-63 dispersed
Lac10g3152 Lac-Chr10:45764467 Lac7g2385 Lac-Chr7:40457944 1.00E-69 transposed
Lac1g1960 Lac-Chr1:41193495 Lac7g2385 Lac-Chr7:40457944 7.60E-46 transposed
Lac7g2385 Lac-Chr7:40457944 Lac9g0810 Lac-Chr9:17043637 1.80E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24207 PF07526 POX 2.10E-43 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2385 - - - 0.0