Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2419 ATGGAGAAATCTGGGTATGGTCGCGATGGGATTTTCAGGTCCTTACGGCCTCCGATCGTCTTTCCCAAAGACCCCAATCTCTCCATGGTCTCTTTCCTCTTCCGGAATTCATCGTCTTATCCCGACAGACTCGCCATTGTCGATGCCGAATCCTCTGATTCTGTCTCGTATTCCCAGCTTAAAGCCTCTGCGATTAGGGTCTCCCATGGCTTGCTCCAATTGGGTATCGAGAAAAACGATGTGGTACTTATTTTTGCACCAAATTCAGTTCAATTCTCCATCTGTTTCATCGGAATTGTTGCCATTGGGGCTATTGTAACCACTTGTAATCCTGTCTTCACGGTCTTTGAGTTAACCAAGCAAGTTACAGATGCTAAACCCAAACTTGTGATATCTGTTGCTGAATTGTGGGACAAAGTGAAGGATCTAGACATCCCAACAGTGTTACTAGACCAGAAAGTTCCTTCAGCAATCCCCTCTTCAAAATTTTTCAGTTTCAATGATTTGATGAACATGGCTGGTGATAAATCTGGCTCTGAGTTCCCAATTGTTGGGGTGAAACAGAGTGATACAGCTACACTTCTATATTCATCAGGAACAACAGGAGCCAGTAAGGGTGTCATTTTGACTCACAGAAACTTTATAACGTCTTCACTGATGATAACACTGGACCAGACGTTTCGTGGAGAGGAAATTGGCGTATTTCTGAACTTTTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGGGCAGCTGCAGAAAGGGAACACCATTGTTTCTATGCCAAGGTTTAACCTGGAGAAGGCCTTGTGGGCAGTGGAGAAGTACAAGGTGACAGATCTGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTGGCAAAGCAGAGTGTGGTGAAGAAATACAACCTTTCATCCGTGAAGCGTCTCGGTTCAGGGGCTGCACCTCTCGGGAAGGAATTGATGGAGGAATGTGCTAATAACATTCCCAGTGCTGTGGTTCTCCAGGGTTATGGTATGACTGAGACTTGTGGAGTTGTCTCTTTGGAGAATCCAGCAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTTGAGGCTCAAATAGTCAGCGTAGATACTTTGAAGCCTCTTCCTCCCAATCAATATGGAGAGATACAGGTTCGGGGACCAAATATGATGCTAGGATATTTCAACAATCCACGGGCCACCAAGCAAACTATTGATAAATATGGCTGGGTGCATACTGGAGACCTTGGTTACTTTGATGAAAATGGGCAGCTTTATGTTGTTGATCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAACTTGAAGCACTGTTGGTTTCTCACCCCGAGATACTAGATGCTGTTGTCATCCCCTACCCCGATGCCGAAGCGGGAGAAGTTCCTATCGCATATGTTGTTCGATCTACCAATAGTTATTTGACTGAAGAGGACATCCTCAAATTCGTCGCTGATCAGGTTTCTCCTTACAAAAGGTTAAGAAGAGTAACATTCATCACCAGTGTCCCCAAGTCTGTTTCTGGGAAAATCCTCAGAAGGGAACTCATCGAGAAAGTAAGAGCTAAAATCTGA 1632 44.79 MEKSGYGRDGIFRSLRPPIVFPKDPNLSMVSFLFRNSSSYPDRLAIVDAESSDSVSYSQLKASAIRVSHGLLQLGIEKNDVVLIFAPNSVQFSICFIGIVAIGAIVTTCNPVFTVFELTKQVTDAKPKLVISVAELWDKVKDLDIPTVLLDQKVPSAIPSSKFFSFNDLMNMAGDKSGSEFPIVGVKQSDTATLLYSSGTTGASKGVILTHRNFITSSLMITLDQTFRGEEIGVFLNFLPMFHVFGLACITYGQLQKGNTIVSMPRFNLEKALWAVEKYKVTDLWVVPPVVLALAKQSVVKKYNLSSVKRLGSGAAPLGKELMEECANNIPSAVVLQGYGMTETCGVVSLENPAVGKRNSGSAGTLASGVEAQIVSVDTLKPLPPNQYGEIQVRGPNMMLGYFNNPRATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDAEAGEVPIAYVVRSTNSYLTEEDILKFVADQVSPYKRLRRVTFITSVPKSVSGKILRRELIEKVRAKI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41297922 41302381 + Lag0022936.1 Lac7g2419 615320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2419 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 535 - GO:0016405(PANTHER)
Lac7g2419 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Lac7g2419 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 440 - -
Lac7g2419 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Lac7g2419 543 CDD 4CL 21 535 - -
Lac7g2419 543 Gene3D - 9 440 IPR042099 -
Lac7g2419 543 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Lac7g2419 543 SUPERFAMILY Acetyl-CoA synthetase-like 17 541 - -
Lac7g2419 543 Pfam AMP-binding enzyme 35 403 IPR000873 -
Lac7g2419 543 Gene3D - 441 542 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2997 Lac-Chr10:44550185 Lac7g2419 Lac-Chr7:41297922 2.80E-190 dispersed
Lac11g2107 Lac-Chr11:36993121 Lac7g2419 Lac-Chr7:41297922 3.70E-51 dispersed
Lac2g0105 Lac-Chr2:785034 Lac7g2419 Lac-Chr7:41297922 3.20E-119 dispersed
Lac7g2419 Lac-Chr7:41297922 Lac9g1420 Lac-Chr9:32082077 3.20E-109 dispersed
Lac7g2419 Lac-Chr7:41297922 Lac11g0573 Lac-Chr11:5816331 2.20E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2419 K01904 - csv:101220141 969.533