Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2509 ATGTTACTTCGTGCTCCACCTTCACCTTCTTCTTCTCCTTTTCACGCATCTCCTCCTCCCTTTGAGAAGCTCATTGTCGCCACCGTCTCTCTCCGTTCAGTGCAGCCGCCGCCGTCTTTCTTCCGCTCGTGCCGCCACATCCTCCCTCCTAGGGGGTTTTCACTGATTTTCTACTCTCTTGTTGTTACTGGAATCATGGAGGACGAAGTTCAAAATGATGTGATTGATCAGGTGGCAGATATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCCGGCCGATGAGTCTATTGACAAGTTAGCAGAGAAAACTGAAAATTTGTCTGTTTCTGATGGTTTGGAGACGACCACATTTTCTGGACTTAAAAAGAAGAAAAAGAAACCAGTAGAGGCTAGCTCCTTGAATGATGATGGTGCTGATGCCATGGAGGATTTGGATGATCAAGCGGGAGAGAATGAAGAACGGGAGGGAATTGTTCTACAATATCGTTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGCTTCTTGGACGGGTGTTCAACATTCTTAGAGAGAATAATCCAGAGCTAGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCATCGACAGCCAGACCATGTTATGGCTTTCTTATTGGCCGAACTGGGAACCAGCGGGTCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTACGTCGATATGTCAACGAATATGTGATTTGTATTGGGTGCAAGAGTCCAGACACTATCCTTTCCAAGGAGAATCGACTCTTCTTTCTCAGATGCGAAAAGTGTGGTTCTGGACGATCGGTTGCTCCAATTAAAGCTGGTTTTGTTGCTCGTGTTGGCCGGAGGAACGCCGGGACGTGA 1008 45.73 MLLRAPPSPSSSPFHASPPPFEKLIVATVSLRSVQPPPSFFRSCRHILPPRGFSLIFYSLVVTGIMEDEVQNDVIDQVADIAPFDPTKKKKKKKVVLQDPADESIDKLAEKTENLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADAMEDLDDQAGENEEREGIVLQYRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43038372 43067343 + Lag0023026.1 Lac7g2509 615410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2509 335 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 180 287 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac7g2509 335 FunFam Eukaryotic translation initiation factor 2 subunit 178 320 - -
Lac7g2509 335 SMART eIF2Bneu4 205 314 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac7g2509 335 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 92 322 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
Lac7g2509 335 Pfam Domain found in IF2B/IF5 204 313 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac7g2509 335 MobiDBLite consensus disorder prediction 128 151 - -
Lac7g2509 335 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 284 319 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac7g2509 335 Gene3D - 178 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2858 Lac-Chr2:44928379 Lac7g2509 Lac-Chr7:43038372 5.00E-09 dispersed
Lac7g2509 Lac-Chr7:43038372 Lac7g2919 Lac-Chr7:48208474 9.30E-144 dispersed
Lac7g2509 Lac-Chr7:43038372 Lac2g3096 Lac-Chr2:49076636 4.80E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2509 K03238 - csv:101220978 503.827