Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2531 ATGGAGAAAAGTGAGGCAAATATGGCGGCGGCGGTCAGTCCGTGTGCGGCTTGTAAGATTCTACGGCGGAGATGCAGAGAGAATTGCATATTGGGGCCCTATTTTCCACCAAATGAGCCTCTCAAATTCACCATTGCCCATAGGGTATTTGGTGCTAGCAACATCATCAAGTTACTTCAGGATCTTCCCAAATCGCAAAGAGCAGACGCAGTGAACAGTATGGTATACGAAGCGAGTGCAAGAATAAGAGATCCGGTTTACGGGAGCGCGGGCTCGATTTTCCAACTCCAAAGACAAATAAATGAGGTGCAAGCAGAGTTAGCCAAGGCTCAAGCAGAGCTTCTGAACATGCAATGTCAACAAGCCAATTTGGTGAGTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTTTGATCACAATTCACTTGATGCCATTTTCAACATTGGTAGCCCTCAAAGTTATCATCAAAGCTATTCACATTTGATTGAGGATAGTAATATTTTGGAGCCTCTTTGGACTTAG 534 44.57 MEKSEANMAAAVSPCAACKILRRRCRENCILGPYFPPNEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPVYGSAGSIFQLQRQINEVQAELAKAQAELLNMQCQQANLVSLICKELAQMPQPPMFDHNSLDAIFNIGSPQSYHQSYSHLIEDSNILEPLWT 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43325113 43327659 - Lag0023048.1 Lac7g2531 615432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2531 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 134 - -
Lac7g2531 177 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Lac7g2531 177 Coils Coil 93 120 - -
Lac7g2531 177 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2531 Lac-Chr7:43325113 Lac9g2362 Lac-Chr9:42835271 2.30E-32 dispersed
Lac7g2531 Lac-Chr7:43325113 Lac7g2532 Lac-Chr7:43406229 1.20E-60 tandem
Lac12g1883 Lac-Chr12:35332115 Lac7g2531 Lac-Chr7:43325113 2.10E-20 wgd
Lac7g2531 Lac-Chr7:43325113 Lac9g2556 Lac-Chr9:44206803 1.00E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24214 PF03195 LOB 1.40E-39 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2531 - - - 0.0