Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2532 ATGGAGTGCAGTGAGGCAAAATCCAGCCCAACTTCAACCATCCTCCGTTCTCAGTCGCCGTCGTCGTCCTCTTTGCCGCCGCCGCCGAGCATTCAGGCCGGCGTTGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTCAGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCCTATTTCCCTCCCTCCGATCCTCTCAAATTCACCATTGCTCACCGAGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGGGCTGATGCAGTGAGCAGTTTGGTGTACGAAGCAAGTGCAAGAATCAGAGATCCAGTTTACGGGTGTGCAGGGGCCATATGCCAGCTCCAGAAACAGATAAACGAACTGCAAGCAGAGCTAGCCAAGACACAGGCTGAGCTTGTCAACATGCAGTGCCAACAAGCCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCTCAAACGCCGCCACCGGCACCGCCGCCGGACCACCGCTCGGTTGACAACAATTTCAACATTGCCCCTCCTCAGAGCTACCAAAGCTACTCATCTTTGTTTGAGGATAGCAACATTTGGGAAGCTCTTTGGACATGA 609 53.37 MECSEAKSSPTSTILRSQSPSSSSLPPPPSIQAGVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNMQCQQANLVALICKELAQTPPPAPPPDHRSVDNNFNIAPPQSYQSYSSLFEDSNIWEALWT 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43406229 43407473 + Lag0023049.1 Lac7g2532 615433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2532 202 MobiDBLite consensus disorder prediction 1 21 - -
Lac7g2532 202 MobiDBLite consensus disorder prediction 1 29 - -
Lac7g2532 202 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Lac7g2532 202 Coils Coil 118 145 - -
Lac7g2532 202 Pfam Lateral organ boundaries (LOB) domain 39 136 IPR004883 -
Lac7g2532 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0890 Lac-Chr13:7301210 Lac7g2532 Lac-Chr7:43406229 1.80E-49 dispersed
Lac7g2532 Lac-Chr7:43406229 Lac9g2556 Lac-Chr9:44206803 1.70E-55 dispersed
Lac7g2531 Lac-Chr7:43325113 Lac7g2532 Lac-Chr7:43406229 1.20E-60 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24215 PF03195 LOB 3.10E-41 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2532 - - - 0.0