Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2535 ATGGTAGTGGCTCATCTGCTTTTCCGATCTATTAGTTCCTTTTGTTTAGAGGTTATTGCATATTTGGTTACTGTTAAAAGACTAACAGTAATGCTGGCGAACCTGAGAGCTCTATATTTTACAGCAACACTGATAAACTTGAGAGCTCTATGTTCTTATAAGGACAAACGACTTTCTGCAGTGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAAAATGGCATTGACAAAGTTTCCACCTTCTGTAGATCGAAAAAAATGGTCCAATGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAAGAGATGGTGCTTCAGATGTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCAGCAGATTCAGATGATCTGGATAGCATTATTGCATCAATAAAAGACCTTGATATTACCCCTGAAAAGATTAGGGAATTTCTACCAAAAGTTAATTGGGACAAACTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGAGGACAAGAATCTTTTGTTTACCATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACCAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACCGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCGGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTCAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCACTGACTTTCGGCCTCGACCGGATACAGATTTATCATTCAGGTCTTCGTTTTCTTTTCTTTTTCTTTTTCCTGAAAGAAATCTGTAGTCAGGCATTGAAGCTCTTGTTATTTCTTTCTTCATGTGGTATTGCAAATATTTCGTCTTCTGTCCCGGAGGAGGTTAAATCTATAAAACCTCAAAGACAACGAAGTAGAAATGGAGCGCATACCACTAAGAGGAAGAAGGGAGTTCTGGAGCCACGTTCTAACAGTGAGAGACGTGTCGAACAGAATTTGGATACTCAGAGCCTCGAGTTGCAGCTGAATAGTAAGGAATCAGAGAGGACCAGCAGTGACTGCACTGAGACTGTTGATGAAAATGGTATGGAGTCGTGTGAGAACAAAGTTGCAGAGAAGCTTTCTAAAAGAGATGTATGCTTTTCAGAGCAAGAAGAAAATCAAAACTCTACTGGATCTTCTGGAGTATCAGTATTGTCAGAAATGACCGACATGGACGAGTACAATCCCTCTATTATCCTTCCAGCAGATACAGCATTGCTGGCCATCCCTACTGGGGATGATATTATAGAAAGGAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTTTCTCGTTACCGCACAGTTGCTTAGAACTCAGGGCAACTGACAGTGAAGGTGTCAACAGCTATTCTGTGGATGAAGTCACAGGTAAAGGCCATGGGGTTTGCAAGTACCAAGGCAGAAGGAAGAAAAATAGTAAAACATCAAATAAGAGCCAGGATTCATTGGTTTCTTGTAGACAAGTGGAGCTGGAGAGGTCGGAGACGAAGGAGCTTCATCGTCATAATCAATCGAAGAAGAGAAAGCATAACAGTACAAATACGACGAGTTTATTAGGAACATCGGAGACATTCGAAGAGGTCGATGACTGCACTCTTCTGGGCTTTTTGCAGAAAAGAGTGAAGAGGACGAACACGAGACATGACAAGAAAGTTGATGGCAGCTCTAGTTCATTAGAAGTTGATAATGATGATAATGATCCTACCATTGCCTCGCTTCTCAAGGATAAATTGAAGAGAAAAAGGCATGAAGCGGCCAGTGGTGGAGGCTAA 2370 42.11 MVVAHLLFRSISSFCLEVIAYLVTVKRLTVMLANLRALYFTATLINLRALCSYKDKRLSAVYYGPAENSHVACYKMALTKFPPSVDRKKWSNVERENLGKGIRQQFQEMVLQMSVDQISGLQGFSADSDDLDSIIASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCQWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPLTFGLDRIQIYHSGLRFLFFFFFLKEICSQALKLLLFLSSCGIANISSSVPEEVKSIKPQRQRSRNGAHTTKRKKGVLEPRSNSERRVEQNLDTQSLELQLNSKESERTSSDCTETVDENGMESCENKVAEKLSKRDVCFSEQEENQNSTGSSGVSVLSEMTDMDEYNPSIILPADTALLAIPTGDDIIERNGESVADKDLDDSFSLPHSCLELRATDSEGVNSYSVDEVTGKGHGVCKYQGRRKKNSKTSNKSQDSLVSCRQVELERSETKELHRHNQSKKRKHNSTNTTSLLGTSETFEEVDDCTLLGFLQKRVKRTNTRHDKKVDGSSSSLEVDNDDNDPTIASLLKDKLKRKRHEAASGGG 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43434192 43440046 - Lag0023052.1 Lac7g2535 615436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2535 789 Gene3D - 184 234 - -
Lac7g2535 789 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 55 785 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Lac7g2535 789 Gene3D - 289 344 - -
Lac7g2535 789 MobiDBLite consensus disorder prediction 478 543 - -
Lac7g2535 789 CDD SANT 242 286 IPR001005 -
Lac7g2535 789 ProSiteProfiles Myb-like domain profile. 182 234 IPR001005 -
Lac7g2535 789 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 290 IPR017930 -
Lac7g2535 789 SUPERFAMILY Homeodomain-like 219 290 IPR009057 -
Lac7g2535 789 ProSiteProfiles Myb-like domain profile. 235 286 IPR001005 -
Lac7g2535 789 CDD SANT 296 337 IPR001005 -
Lac7g2535 789 Pfam Myb-like DNA-binding domain 187 232 IPR001005 -
Lac7g2535 789 Pfam Myb-like DNA-binding domain 240 284 IPR001005 -
Lac7g2535 789 Pfam Myb-like DNA-binding domain 345 389 IPR001005 -
Lac7g2535 789 Pfam Myb-like DNA-binding domain 293 339 IPR001005 -
Lac7g2535 789 SMART sant 239 288 IPR001005 -
Lac7g2535 789 SMART sant 86 183 IPR001005 -
Lac7g2535 789 SMART sant 186 236 IPR001005 -
Lac7g2535 789 SMART sant 344 392 IPR001005 -
Lac7g2535 789 SMART sant 292 341 IPR001005 -
Lac7g2535 789 MobiDBLite consensus disorder prediction 517 531 - -
Lac7g2535 789 CDD SANT 348 390 IPR001005 -
Lac7g2535 789 MobiDBLite consensus disorder prediction 496 516 - -
Lac7g2535 789 Gene3D - 239 288 - -
Lac7g2535 789 ProSiteProfiles SANT domain profile. 238 287 IPR017884 -
Lac7g2535 789 ProSiteProfiles Myb-like domain profile. 288 339 IPR001005 -
Lac7g2535 789 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 340 394 IPR017930 -
Lac7g2535 789 MobiDBLite consensus disorder prediction 745 768 - -
Lac7g2535 789 MobiDBLite consensus disorder prediction 660 717 - -
Lac7g2535 789 SUPERFAMILY Homeodomain-like 163 230 IPR009057 -
Lac7g2535 789 ProSiteProfiles Myb-like domain profile. 340 390 IPR001005 -
Lac7g2535 789 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 292 339 IPR017930 -
Lac7g2535 789 Gene3D - 347 393 - -
Lac7g2535 789 SUPERFAMILY Homeodomain-like 290 386 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0437 Lac-Chr3:3338555 Lac7g2535 Lac-Chr7:43434192 3.10E-284 dispersed
Lac3g1942 Lac-Chr3:22175987 Lac7g2535 Lac-Chr7:43434192 2.20E-10 dispersed
Lac7g2535 Lac-Chr7:43434192 Lac5g1299 Lac-Chr5:25278589 9.20E-09 dispersed
Lac7g2535 Lac-Chr7:43434192 Lac3g0713 Lac-Chr3:5627086 7.80E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24216 PF00249 Myb_DNA-binding 7.30E-09 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2535 K09422 - csv:101216287 892.108