Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2535 ATGGTAGTGGCTCATCTGCTTTTCCGATCTATTAGTTCCTTTTGTTTAGAGGTTATTGCATATTTGGTTACTGTTAAAAGACTAACAGTAATGCTGGCGAACCTGAGAGCTCTATATTTTACAGCAACACTGATAAACTTGAGAGCTCTATGTTCTTATAAGGACAAACGACTTTCTGCAGTGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAAAATGGCATTGACAAAGTTTCCACCTTCTGTAGATCGAAAAAAATGGTCCAATGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAAGAGATGGTGCTTCAGATGTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCAGCAGATTCAGATGATCTGGATAGCATTATTGCATCAATAAAAGACCTTGATATTACCCCTGAAAAGATTAGGGAATTTCTACCAAAAGTTAATTGGGACAAACTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGAGGACAAGAATCTTTTGTTTACCATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACCAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACCGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCGGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTCAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCACTGACTTTCGGCCTCGACCGGATACAGATTTATCATTCAGGTCTTCGTTTTCTTTTCTTTTTCTTTTTCCTGAAAGAAATCTGTAGTCAGGCATTGAAGCTCTTGTTATTTCTTTCTTCATGTGGTATTGCAAATATTTCGTCTTCTGTCCCGGAGGAGGTTAAATCTATAAAACCTCAAAGACAACGAAGTAGAAATGGAGCGCATACCACTAAGAGGAAGAAGGGAGTTCTGGAGCCACGTTCTAACAGTGAGAGACGTGTCGAACAGAATTTGGATACTCAGAGCCTCGAGTTGCAGCTGAATAGTAAGGAATCAGAGAGGACCAGCAGTGACTGCACTGAGACTGTTGATGAAAATGGTATGGAGTCGTGTGAGAACAAAGTTGCAGAGAAGCTTTCTAAAAGAGATGTATGCTTTTCAGAGCAAGAAGAAAATCAAAACTCTACTGGATCTTCTGGAGTATCAGTATTGTCAGAAATGACCGACATGGACGAGTACAATCCCTCTATTATCCTTCCAGCAGATACAGCATTGCTGGCCATCCCTACTGGGGATGATATTATAGAAAGGAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTTTCTCGTTACCGCACAGTTGCTTAGAACTCAGGGCAACTGACAGTGAAGGTGTCAACAGCTATTCTGTGGATGAAGTCACAGGTAAAGGCCATGGGGTTTGCAAGTACCAAGGCAGAAGGAAGAAAAATAGTAAAACATCAAATAAGAGCCAGGATTCATTGGTTTCTTGTAGACAAGTGGAGCTGGAGAGGTCGGAGACGAAGGAGCTTCATCGTCATAATCAATCGAAGAAGAGAAAGCATAACAGTACAAATACGACGAGTTTATTAGGAACATCGGAGACATTCGAAGAGGTCGATGACTGCACTCTTCTGGGCTTTTTGCAGAAAAGAGTGAAGAGGACGAACACGAGACATGACAAGAAAGTTGATGGCAGCTCTAGTTCATTAGAAGTTGATAATGATGATAATGATCCTACCATTGCCTCGCTTCTCAAGGATAAATTGAAGAGAAAAAGGCATGAAGCGGCCAGTGGTGGAGGCTAA 2370 42.11 MVVAHLLFRSISSFCLEVIAYLVTVKRLTVMLANLRALYFTATLINLRALCSYKDKRLSAVYYGPAENSHVACYKMALTKFPPSVDRKKWSNVERENLGKGIRQQFQEMVLQMSVDQISGLQGFSADSDDLDSIIASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCQWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPLTFGLDRIQIYHSGLRFLFFFFFLKEICSQALKLLLFLSSCGIANISSSVPEEVKSIKPQRQRSRNGAHTTKRKKGVLEPRSNSERRVEQNLDTQSLELQLNSKESERTSSDCTETVDENGMESCENKVAEKLSKRDVCFSEQEENQNSTGSSGVSVLSEMTDMDEYNPSIILPADTALLAIPTGDDIIERNGESVADKDLDDSFSLPHSCLELRATDSEGVNSYSVDEVTGKGHGVCKYQGRRKKNSKTSNKSQDSLVSCRQVELERSETKELHRHNQSKKRKHNSTNTTSLLGTSETFEEVDDCTLLGFLQKRVKRTNTRHDKKVDGSSSSLEVDNDDNDPTIASLLKDKLKRKRHEAASGGG 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43434192 43440046 - Lag0023052.1 Lac7g2535 615436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2535 789 Gene3D - 184 234 - -
Lac7g2535 789 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 55 785 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Lac7g2535 789 Gene3D - 289 344 - -
Lac7g2535 789 MobiDBLite consensus disorder prediction 478 543 - -
Lac7g2535 789 CDD SANT 242 286 IPR001005 -
Lac7g2535 789 ProSiteProfiles Myb-like domain profile. 182 234 IPR001005 -
Lac7g2535 789 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 290 IPR017930 -
Lac7g2535 789 SUPERFAMILY Homeodomain-like 219 290 IPR009057 -
Lac7g2535 789 ProSiteProfiles Myb-like domain profile. 235 286 IPR001005 -
Lac7g2535 789 CDD SANT 296 337 IPR001005 -
Lac7g2535 789 Pfam Myb-like DNA-binding domain 187 232 IPR001005 -
Lac7g2535 789 Pfam Myb-like DNA-binding domain 240 284 IPR001005 -
Lac7g2535 789 Pfam Myb-like DNA-binding domain 345 389 IPR001005 -
Lac7g2535 789 Pfam Myb-like DNA-binding domain 293 339 IPR001005 -
Lac7g2535 789 SMART sant 239 288 IPR001005 -
Lac7g2535 789 SMART sant 86 183 IPR001005 -
Lac7g2535 789 SMART sant 186 236 IPR001005 -
Lac7g2535 789 SMART sant 344 392 IPR001005 -
Lac7g2535 789 SMART sant 292 341 IPR001005 -
Lac7g2535 789 MobiDBLite consensus disorder prediction 517 531 - -
Lac7g2535 789 CDD SANT 348 390 IPR001005 -
Lac7g2535 789 MobiDBLite consensus disorder prediction 496 516 - -
Lac7g2535 789 Gene3D - 239 288 - -
Lac7g2535 789 ProSiteProfiles SANT domain profile. 238 287 IPR017884 -
Lac7g2535 789 ProSiteProfiles Myb-like domain profile. 288 339 IPR001005 -
Lac7g2535 789 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 340 394 IPR017930 -
Lac7g2535 789 MobiDBLite consensus disorder prediction 745 768 - -
Lac7g2535 789 MobiDBLite consensus disorder prediction 660 717 - -
Lac7g2535 789 SUPERFAMILY Homeodomain-like 163 230 IPR009057 -
Lac7g2535 789 ProSiteProfiles Myb-like domain profile. 340 390 IPR001005 -
Lac7g2535 789 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 292 339 IPR017930 -
Lac7g2535 789 Gene3D - 347 393 - -
Lac7g2535 789 SUPERFAMILY Homeodomain-like 290 386 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2535 K09422 - - csv:101216287 892.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0437 Lac-Chr3:3338555 Lac7g2535 Lac-Chr7:43434192 3.10E-284 dispersed
Lac3g1942 Lac-Chr3:22175987 Lac7g2535 Lac-Chr7:43434192 2.20E-10 dispersed
Lac7g2535 Lac-Chr7:43434192 Lac5g1299 Lac-Chr5:25278589 9.20E-09 dispersed
Lac7g2535 Lac-Chr7:43434192 Lac3g0713 Lac-Chr3:5627086 7.80E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1942 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.1 0.0e+00 1211.1
Lac3g0437 . 454 908 MYB-Related Transcription Factor Family AT3G18100 57.4 4.5e-153 539.3
Lac7g2535 . 55 422 MYB-Related Transcription Factor Family AT3G18100 60.6 2.4e-130 463.8
Lac3g0437 . 454 908 MYB-Related Transcription Factor Family AT3G18100 57.4 4.5e-153 539.3
Lac7g2535 . 55 422 MYB-Related Transcription Factor Family AT3G18100 60.6 2.4e-130 463.8
Lac3g1942 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.1 0.0e+00 1211.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24216 PF00249 Myb_DNA-binding 7.30E-09 CL0123 Lac TF