Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2559 ATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATGTGCGAGATATGCAACAAGGGGTTTCAAAGGGACCAGAACTTGCAGCTCCACCGGCGCGGTCACAACCTACCGTGGAAGCTCCGACAGAGGACGAGCAAGGAGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTGACCGGAATCAAGAAGCACTACAGCAGGAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAGTATGCAGTTCAGTCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTTTGTGATGCATTAGCTGAAGAAAATGTAAGAATCACCTCAGTTTCAACTATAAATCATCATCATCATCATCATTCAACCTTCATAAACAACAACAACACTCTTCAAAACAATCCCACCACAATCCCCCATCACTTTTCTCCTCCTCCTTCCCTACTTTTCCAACCAAACTTCGCCGCCACCGCCGTCGTCGTCGCCGATCAAACCTCGACCACCAACAATTTCCCTAACTTTATCTCCGACCACGACGACGACCACAAGCCATTGCCACTGCCACCGTCGTCGTCGCAGCTCCCTCTCTGGCTCGACCCTCCACCGAACCCCAACTCCTTCTTCTCCGACCACACCGCGTTCTTGCCTGACAATCACCACCCTTTCTTGTCGGAGGCGTTAACGACGGCCTCCTCGTACACCATGTCCGCCACCGCACTTCTCCAGAAAGCTGCCCAAATGGGGCCGACCAGAACTCCGCCTGTCACGCCGCCGATTCTATTCAACACCAGTGCTGCCAGCGCCGCCGCTGCAACGTATGGGATGAACAACTCAGCCGCGGTGTTTTCCGACGGGCGTCCGGCGATGAAGCCATTGATGGGCGGAGCAAAGGAAGACATTGGAGGGCAGAATTTGACCAGAGATTTTCTTGGCGTCGGAAACCAGCTGATGCATCTCACGGCGGTGGGCTCCAATCAATACAGTGATCAGAGCCGCCGCCATTAG 1119 53.44 MSPKSLMAKNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENVRITSVSTINHHHHHHSTFINNNNTLQNNPTTIPHHFSPPPSLLFQPNFAATAVVVADQTSTTNNFPNFISDHDDDHKPLPLPPSSSQLPLWLDPPPNPNSFFSDHTAFLPDNHHPFLSEALTTASSYTMSATALLQKAAQMGPTRTPPVTPPILFNTSAASAAAATYGMNNSAAVFSDGRPAMKPLMGGAKEDIGGQNLTRDFLGVGNQLMHLTAVGSNQYSDQSRRH 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43841733 43843168 + Lag0023076.1 Lac7g2559 615460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2559 372 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 360 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac7g2559 372 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 49 83 - -
Lac7g2559 372 Gene3D Classic Zinc Finger 45 137 - -
Lac7g2559 372 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 87 111 - -
Lac7g2559 372 SUPERFAMILY beta-beta-alpha zinc fingers 11 108 IPR036236 -
Lac7g2559 372 Gene3D Classic Zinc Finger 8 35 - -
Lac7g2559 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Lac7g2559 372 SMART c2h2final6 12 34 IPR013087 -
Lac7g2559 372 SMART c2h2final6 88 108 IPR013087 -
Lac7g2559 372 SMART c2h2final6 53 83 IPR013087 -
Lac7g2559 372 FunFam protein indeterminate-domain 5, chloroplastic-like 66 145 - -
Lac7g2559 372 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Lac7g2559 372 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 114 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2559 Lac-Chr7:43841733 Lac9g2004 Lac-Chr9:39675566 2.40E-76 dispersed
Lac7g2559 Lac-Chr7:43841733 Lac1g2114 Lac-Chr1:42624689 1.20E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24217 PF12171 zf-C2H2_jaz 4.30E-05 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2559 K25870 - csv:101212420 490.73