Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g2600 | ATGCAACTAATTCCGCAGCTCTGTTTTTGGAGCTCAGAAACAGAGGGAGTGGTGAAGGAGGAACTCGAATTTGTAATGGGTTGCTTTCGTTGCACCGGTTCATCGAGCAAGAAATCGGAGAATATCGAAGAAAACCATCCCAATACCTTCAATTCCAAAACCCAGAAGCCCGATGATCGAAAGTTTTCAGATAAAGCCAAAATAATTTCAAGTTTGGCCTTGAAGAAGGATTCTGATGTGAAGGTGGTTGTGTCTAAAAATGACCAATTGTCTTTAGATGTAAAGAAATTGAATTTGAAAGATGAGGTTTCTAAAGAAGGAGAAACCAATAACCGTGCCAAGACTTTTATATTTCAAGAACTTGCCGCGGCGACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGAAAAGTTTACAAGGGATATTTGCAGCAAGTTAATGAGGTTGTAGCAATCAAACAACTTGACCGCAATGGACTTCAAGGAATTCGGGAGTTCGTTGTGGAAGTCTTGACTTTAAGTCTAGCTGATCACCCTAACCTTGTAAAACTCATTGGATTTTGTGCTGAAGGGGATCAGAGGCTGTTGGTTTATGAATACATGCCATTGGGATCGTTGGAAAATCATTTACATGATCTTCGACCCGGTGCAAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCTGCAAGGGGTTTGGAGTATTTGCATGAACAGATGAAGCCCCCAGTTATATATCGTGATCTGAAATGCTCAAACATTTTGCTTGGTGAAGGGTATCATCCAAAGCTATCTGATTTTGGATTAGCTAAAGTAGGTCCCAGTGGGGATAAAACCCATGTTTCAACCAGGGTTATGGGCACATATGGTTACTGTGCGCCTGATTATGCAATGACGGGCCAGCTTACATTCAAATCCGATATTTATAGCTTTGGCGTTGTTTTGTTGGAACTCATCACTGGCAGAAAAGCAATTGATCATTCAAAACCTCATTCGGAGCAAAATCTTGTGGCTTGGGCACGACCCTTGTTCAGAGACCGAAAGAAGTTCTCACAAATGATTGACCCGGTGCTCCAAGGACAGTATCCCATGAGAGGATTATACCAATCTCTGGCCATTGCTGCAATGTGTGTTCAGGAGCAACCGAACATGCGGCCAGTTATATCTGATGTGGTTACCGCTCTAAACTACCTAGCATCCCAGAAATATGATCCCCAAACTCAACCAAACCAGAGCTCCCAAAAGAGACCATCTCCTAAACAGGAACAGGGCGATGACAAGAGGGAAACTTCAGACAACGGGTCGGAGAGAGTGAGGCGGGAGGGTGTCTCTGAAAACTCCTCTGTAAAATGTGGTAAGGTGAAACTTTCATTGTGCAATGTTCTTATGGAGGATGTGGAGCTTGTTTATGTGAATTGTACCTTGCTTATTTATGACCAGAATGCCCGAAAATCTAGTTTGAGCCCACTCGGGCTGGACCAGGAAGAGAAGCGAAGATTGAGAAAAGGCTCATTGCTGGCCCGAGCCTCTGGGAAGGATCTTGCTAGGCCTAGAGGAGCTTCAATCACCAAGCTGGGGATCGCTGATGGGCAATTCAGGTCACGTCTTTTCCATCTTCAACAAATTCATTGTTGGTGTCATGTGAAAGTCAGGAAATATGCAATAGCACTAGGAAACTCGATTGGATCCTCTAAGAAGAGGAACCAAGTTAAAAGTGGACTCAATGGTAGAGAAGAAGTTTGGATCCCGATTACTATAGAAAAACTGTCGGACTTCTGTTATCAGTGTGGGAGATTGGACCATGTTATGAAAGAGTGTGAGGAAGACGACGATGAAGAAGAGGAAGAAGAGAGAAATCAATACGAGCCAGTCAAAAGAACATTCGGTCTTAAAACTGAAATCAAAGGAAAAAAGGAATTGGAGAAGAGGAAAATAAAAATAAAGAGCTAG | 1971 | 42.97 | MQLIPQLCFWSSETEGVVKEELEFVMGCFRCTGSSSKKSENIEENHPNTFNSKTQKPDDRKFSDKAKIISSLALKKDSDVKVVVSKNDQLSLDVKKLNLKDEVSKEGETNNRAKTFIFQELAAATGNFRSDCFLGEGGFGKVYKGYLQQVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEQMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMIDPVLQGQYPMRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQTQPNQSSQKRPSPKQEQGDDKRETSDNGSERVRREGVSENSSVKCGKVKLSLCNVLMEDVELVYVNCTLLIYDQNARKSSLSPLGLDQEEKRRLRKGSLLARASGKDLARPRGASITKLGIADGQFRSRLFHLQQIHCWCHVKVRKYAIALGNSIGSSKKRNQVKSGLNGREEVWIPITIEKLSDFCYQCGRLDHVMKECEEDDDEEEEEERNQYEPVKRTFGLKTEIKGKKELEKRKIKIKS | 656 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 44399152 | 44406245 | - | Lag0023117.1 | Lac7g2600 | 615501 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g2600 | 656 | Gene3D | Transferase(Phosphotransferase) domain 1 | 205 | 429 | - | - | |
Lac7g2600 | 656 | Pfam | Zinc knuckle | 582 | 614 | IPR025836 | - | |
Lac7g2600 | 656 | PANTHER | OS07G0668900 PROTEIN | 80 | 430 | - | - | |
Lac7g2600 | 656 | FunFam | Serine/threonine-protein kinase PBS1 | 205 | 421 | - | - | |
Lac7g2600 | 656 | ProSiteProfiles | Protein kinase domain profile. | 128 | 405 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac7g2600 | 656 | MobiDBLite | consensus disorder prediction | 409 | 425 | - | - | |
Lac7g2600 | 656 | FunFam | probable serine/threonine-protein kinase RLCKVII | 100 | 204 | - | - | |
Lac7g2600 | 656 | Pfam | Protein kinase domain | 133 | 345 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac7g2600 | 656 | MobiDBLite | consensus disorder prediction | 426 | 451 | - | - | |
Lac7g2600 | 656 | Gene3D | Phosphorylase Kinase; domain 1 | 88 | 204 | - | - | |
Lac7g2600 | 656 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 251 | 263 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac7g2600 | 656 | CDD | STKc_IRAK | 134 | 403 | - | - | |
Lac7g2600 | 656 | SUPERFAMILY | Protein kinase-like (PK-like) | 114 | 422 | IPR011009 | - | |
Lac7g2600 | 656 | SMART | serkin_6 | 128 | 405 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac7g2600 | 656 | ProSitePatterns | Protein kinases ATP-binding region signature. | 134 | 157 | IPR017441 | GO:0005524(InterPro) | |
Lac7g2600 | 656 | MobiDBLite | consensus disorder prediction | 409 | 451 | - | - | |
Lac7g2600 | 656 | ProSiteProfiles | Zinc finger CCHC-type profile. | 600 | 615 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Lac7g2600 | 656 | Coils | Coil | 606 | 626 | - | - | |
Lac7g2600 | 656 | MobiDBLite | consensus disorder prediction | 34 | 59 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3058 | Lac-Chr10:45061822 | Lac7g2600 | Lac-Chr7:44399152 | 2.20E-144 | dispersed | |
Lac7g0849 | Lac-Chr7:6877120 | Lac7g2600 | Lac-Chr7:44399152 | 4.20E-141 | dispersed | |
Lac7g2600 | Lac-Chr7:44399152 | Lac9g2536 | Lac-Chr9:44009260 | 4.50E-150 | dispersed | |
Lac13g0875 | Lac-Chr13:7117690 | Lac7g2600 | Lac-Chr7:44399152 | 1.10E-49 | transposed | |
Lac3g2607 | Lac-Chr3:39996838 | Lac7g2600 | Lac-Chr7:44399152 | 1.40E-72 | wgd | |
Lac4g0293 | Lac-Chr4:6615038 | Lac7g2600 | Lac-Chr7:44399152 | 2.70E-59 | wgd | |
Lac7g2600 | Lac-Chr7:44399152 | Lac9g2597 | Lac-Chr9:44494276 | 2.20E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86343 | PF00069 | Pkinase | 1.50E-43 | CL0016 | Lac | PK |
Pathway information
