Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2704 ATGGATTTCTCTTCTGTTCCAGTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATAATCATCATCATCAGATAAGCAATAATGGATCTCCTCAGCAGCACCACCAGCTTCTTTCCCTGCCAACTCAGCAACAACTGCCATCTGCTCCGCCCCCGTCTCATGTCGGTGGTGGCGGCGGCATCATTGGCTCGATCCGACGCGGTTCGATGGCGGACCGAGCTCGGCTGGCCAACGTACCGCTACCCGAGACGGCGCTCAAGTGCCCTCGATGTGATTCCACCAACACGAAGTTCTGTTACTTCAATAACTATAGTCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGACGGTACTGGACTCGTGGTGGCGCCCTTCGGAACGTCCCGGTCGGGGGCGGTTGTCGTCGGAATAAGAAGAACAAAACTAGACGGTCGAAGTCTCCGACGGCCGGGAACGAAACGCAGCTGAATAACAATAACAATTCAAACTCGCCCACCACTACTACAATTCCCTTGCACAGCAGCGCTGAGAATATTATTGGTCATTTACAGCCTCAGCATCATCCTCACCTTTCGTTGATGGCTTCATTGAATAATTTTTCTCGATACGGGACGACGAATTTAGGGTTGAATTTCAATGAGATCCAGGCTCAATCTGGGGACATTGGGAACGGCGCCCTTCTGACTCATCAGTGGCGCGGTTCCCAAAACTTTCCTCTTTCAGGTGGCCTAGAAACCCCGACCGGGTTGTACCCGTTCCAAATTAGCGACGGCGGCGGCAACAACGACGCAGCAAATTCAATCCTACCACCAAATTCAAGGGCAACCCAATTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAACTTGGGTGTCAACAATTCAGAGAACAATCAATTTTGGAGCAATGGAAATGGCTGGACAGATCTTTCAGCTATCAGTTCTTCATCAAGTGGCCATATTTCTTGCGACTTCAATCATTAA 1017 49.75 MDFSSVPVYLDPPPNWHQQSNHNHHHQISNNGSPQQHHQLLSLPTQQQLPSAPPPSHVGGGGGIIGSIRRGSMADRARLANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPTAGNETQLNNNNNSNSPTTTTIPLHSSAENIIGHLQPQHHPHLSLMASLNNFSRYGTTNLGLNFNEIQAQSGDIGNGALLTHQWRGSQNFPLSGGLETPTGLYPFQISDGGGNNDAANSILPPNSRATQLPPVKIEETQVLNLLKSSNLGVNNSENNQFWSNGNGWTDLSAISSSSSGHISCDFNH 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46109159 46110336 - Lag0023221.1 Lac7g2704 615605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2704 338 Pfam Dof domain, zinc finger 88 143 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac7g2704 338 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac7g2704 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 77 202 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g2704 338 MobiDBLite consensus disorder prediction 11 68 - -
Lac7g2704 338 MobiDBLite consensus disorder prediction 14 47 - -
Lac7g2704 338 MobiDBLite consensus disorder prediction 134 171 - -
Lac7g2704 338 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac7g2704 338 MobiDBLite consensus disorder prediction 151 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2704 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3099 Lac-Chr10:45399575 Lac7g2704 Lac-Chr7:46109159 3.80E-44 dispersed
Lac13g0982 Lac-Chr13:8175176 Lac7g2704 Lac-Chr7:46109159 2.00E-50 dispersed
Lac1g2032 Lac-Chr1:41895287 Lac7g2704 Lac-Chr7:46109159 5.70E-38 dispersed
Lac1g2764 Lac-Chr1:48796960 Lac7g2704 Lac-Chr7:46109159 8.60E-30 dispersed
Lac1g3339 Lac-Chr1:53088658 Lac7g2704 Lac-Chr7:46109159 3.10E-28 dispersed
Lac5g1847 Lac-Chr5:36667570 Lac7g2704 Lac-Chr7:46109159 5.00E-28 dispersed
Lac7g2228 Lac-Chr7:36961972 Lac7g2704 Lac-Chr7:46109159 2.10E-22 dispersed
Lac7g2513 Lac-Chr7:43121708 Lac7g2704 Lac-Chr7:46109159 1.10E-28 dispersed
Lac7g2704 Lac-Chr7:46109159 Lac8g2507 Lac-Chr8:42922708 1.30E-36 dispersed
Lac7g2704 Lac-Chr7:46109159 Lac9g2483 Lac-Chr9:43664546 9.60E-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT1G29160 52.5 1.6e-41 166.8
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-39 160.6
Lac8g2507 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 66.7 6.8e-38 155.6
Lac7g2704 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.4e-37 152.9
Lac3g0612 . 115 466 C2C2-Dof Transcription Factor Family AT3G47500 53.1 2.2e-87 320.5
Lac8g0724 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.3 5.0e-76 282.7
Lac1g2524 . 1 149 C2C2-Dof Transcription Factor Family AT5G66940 56.3 2.7e-38 156.4
Lac7g2704 . 66 141 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.8e-38 157.1
Lac1g2032 . 53 126 C2C2-Dof Transcription Factor Family AT5G02460 87.8 9.0e-37 152.1
Lac10g3099 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.9e-37 153.7
Lac3g0537 . 29 325 C2C2-Dof Transcription Factor Family AT5G60850 52.9 2.4e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24224 PF02701 zf-Dof 2.30E-32 No_clan Lac TF