Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g2704 | ATGGATTTCTCTTCTGTTCCAGTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATAATCATCATCATCAGATAAGCAATAATGGATCTCCTCAGCAGCACCACCAGCTTCTTTCCCTGCCAACTCAGCAACAACTGCCATCTGCTCCGCCCCCGTCTCATGTCGGTGGTGGCGGCGGCATCATTGGCTCGATCCGACGCGGTTCGATGGCGGACCGAGCTCGGCTGGCCAACGTACCGCTACCCGAGACGGCGCTCAAGTGCCCTCGATGTGATTCCACCAACACGAAGTTCTGTTACTTCAATAACTATAGTCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGACGGTACTGGACTCGTGGTGGCGCCCTTCGGAACGTCCCGGTCGGGGGCGGTTGTCGTCGGAATAAGAAGAACAAAACTAGACGGTCGAAGTCTCCGACGGCCGGGAACGAAACGCAGCTGAATAACAATAACAATTCAAACTCGCCCACCACTACTACAATTCCCTTGCACAGCAGCGCTGAGAATATTATTGGTCATTTACAGCCTCAGCATCATCCTCACCTTTCGTTGATGGCTTCATTGAATAATTTTTCTCGATACGGGACGACGAATTTAGGGTTGAATTTCAATGAGATCCAGGCTCAATCTGGGGACATTGGGAACGGCGCCCTTCTGACTCATCAGTGGCGCGGTTCCCAAAACTTTCCTCTTTCAGGTGGCCTAGAAACCCCGACCGGGTTGTACCCGTTCCAAATTAGCGACGGCGGCGGCAACAACGACGCAGCAAATTCAATCCTACCACCAAATTCAAGGGCAACCCAATTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAACTTGGGTGTCAACAATTCAGAGAACAATCAATTTTGGAGCAATGGAAATGGCTGGACAGATCTTTCAGCTATCAGTTCTTCATCAAGTGGCCATATTTCTTGCGACTTCAATCATTAA | 1017 | 49.75 | MDFSSVPVYLDPPPNWHQQSNHNHHHQISNNGSPQQHHQLLSLPTQQQLPSAPPPSHVGGGGGIIGSIRRGSMADRARLANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPTAGNETQLNNNNNSNSPTTTTIPLHSSAENIIGHLQPQHHPHLSLMASLNNFSRYGTTNLGLNFNEIQAQSGDIGNGALLTHQWRGSQNFPLSGGLETPTGLYPFQISDGGGNNDAANSILPPNSRATQLPPVKIEETQVLNLLKSSNLGVNNSENNQFWSNGNGWTDLSAISSSSSGHISCDFNH | 338 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 46109159 | 46110336 | - | Lag0023221.1 | Lac7g2704 | 615605 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g2704 | 338 | Pfam | Dof domain, zinc finger | 88 | 143 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lac7g2704 | 338 | ProSitePatterns | Zinc finger Dof-type signature. | 91 | 127 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lac7g2704 | 338 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 77 | 202 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac7g2704 | 338 | MobiDBLite | consensus disorder prediction | 11 | 68 | - | - | |
| Lac7g2704 | 338 | MobiDBLite | consensus disorder prediction | 14 | 47 | - | - | |
| Lac7g2704 | 338 | MobiDBLite | consensus disorder prediction | 134 | 171 | - | - | |
| Lac7g2704 | 338 | ProSiteProfiles | Zinc finger Dof-type profile. | 89 | 143 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lac7g2704 | 338 | MobiDBLite | consensus disorder prediction | 151 | 171 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g3099 | Lac-Chr10:45399575 | Lac7g2704 | Lac-Chr7:46109159 | 3.80E-44 | dispersed | |
| Lac13g0982 | Lac-Chr13:8175176 | Lac7g2704 | Lac-Chr7:46109159 | 2.00E-50 | dispersed | |
| Lac1g2032 | Lac-Chr1:41895287 | Lac7g2704 | Lac-Chr7:46109159 | 5.70E-38 | dispersed | |
| Lac1g2764 | Lac-Chr1:48796960 | Lac7g2704 | Lac-Chr7:46109159 | 8.60E-30 | dispersed | |
| Lac1g3339 | Lac-Chr1:53088658 | Lac7g2704 | Lac-Chr7:46109159 | 3.10E-28 | dispersed | |
| Lac5g1847 | Lac-Chr5:36667570 | Lac7g2704 | Lac-Chr7:46109159 | 5.00E-28 | dispersed | |
| Lac7g2228 | Lac-Chr7:36961972 | Lac7g2704 | Lac-Chr7:46109159 | 2.10E-22 | dispersed | |
| Lac7g2513 | Lac-Chr7:43121708 | Lac7g2704 | Lac-Chr7:46109159 | 1.10E-28 | dispersed | |
| Lac7g2704 | Lac-Chr7:46109159 | Lac8g2507 | Lac-Chr8:42922708 | 1.30E-36 | dispersed | |
| Lac7g2704 | Lac-Chr7:46109159 | Lac9g2483 | Lac-Chr9:43664546 | 9.60E-40 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24224 | PF02701 | zf-Dof | 2.30E-32 | No_clan | Lac | TF |
Pathway information