Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2706 ATGGACGAAGATACCGGCGCTCTGGTTCAGAGCTTGATCGATGTTGTGAACGAGATTGCTTGGATCTCGGATTTTAGGCTTACTGTTAAGAAGCAGTACTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATAGTAAAGAGCCAGTCCCTGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAGCAAATTTCACGAGGTAACGGCTCAGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATCTCCGATGAAGTTAAAGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGCCAGGGCCGATGCACCTGACTCTGAGCTGTTGGATGATATCCTTACCCTTTACAACACAAGCAATGATTCTTCTGTAGATCAAGACCGCTTGAGGAGACTGGCCGGAAAATTACAGTTACTTGGAATATCTGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTACTGGAGGAGATCCAGGTGAGAGCATTGAGAAGATGTCAGGGCTGCTGAAGAAAATAAAAGACTTTGTGCAAACGGAGAACGTCGAAACAGACACTCCTGGTAGAGAAAAGACTCCGCCAGCAAGTTGTAGTGGACAAGTATCCAATGAGAAAAATAATAAGGCCCCAATTATACCTGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTGATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCACGGAACGTGTCCAAAGACACAACAGAACCTTTCAAGCTCTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATCGAACCCCCAAAACGACCCAGCAGTGCTCGACCGTGTAGAAGCTCATCATCTTGCTCACCTGCTGAACGCACGAAGATTGATATTCTGCTTTGCAAACTTGCATCTGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAGCGGAATGCAGATAATCGCGTTGCCATTGCTGAGGCTGGTGCAATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTTGTGCTCAAGAAAGGGAGCATGGAAGCGCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAAAATAAAGTTAGAATTGGCGCCTCTGGAGCTATCCCGCCGCTCGTTACGCTGCTTAGTGAAGGCACTCAAAGGGGTAAGAAGGATGCTGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTCGTTCCAACCTTGATGCAGCTTCTCACTGAACCTGGGACCGGAATGGTGGACGAAGCCTTAGCCATCTTAGCAATACTCGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCAGTGCCGGTTTTGGTAGACGTTATTGGGACAGGATCCCCAAGGAACAGAGAAAATGCAGCTGCAGTTCTCGTGCATCTCTGCTCCGGAGACGAACAATACCTAGTAGAGGCCAGGGATCTCGGAGTGATTAGTCCATTGATAGACTTGGCACGAAATGGCACAGATAGAGGCAAGCGAAAAGCTGCACAGTTGCTAGAGCGAATGAACCGACTCTTCGAGCACGCAGTGCATCCAGAGGAGATTCGGGTGCTTCGGGTGCAAGCGCCAGAGTCTCAACCTCAAAACCAGCCATCGCAATCGACCTCAACGACGGAAGTCGTTGGTAGCTGA 2013 48.44 MDEDTGALVQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVPEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMSKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKARADAPDSELLDDILTLYNTSNDSSVDQDRLRRLAGKLQLLGISDLTQESIALHEMVTATGGDPGESIEKMSGLLKKIKDFVQTENVETDTPGREKTPPASCSGQVSNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSSTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQYLVEARDLGVISPLIDLARNGTDRGKRKAAQLLERMNRLFEHAVHPEEIRVLRVQAPESQPQNQPSQSTSTTEVVGS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46146918 46151143 - Lag0023223.1 Lac7g2706 615607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2706 670 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Lac7g2706 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 SMART arm_5 591 631 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 PANTHER U BOX DOMAIN-CONTAINING 29 630 - -
Lac7g2706 670 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Lac7g2706 670 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac7g2706 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Lac7g2706 670 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
Lac7g2706 670 Gene3D - 495 639 IPR011989 -
Lac7g2706 670 MobiDBLite consensus disorder prediction 237 253 - -
Lac7g2706 670 FunFam RING-type E3 ubiquitin transferase 340 635 - -
Lac7g2706 670 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Lac7g2706 670 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 MobiDBLite consensus disorder prediction 648 670 - -
Lac7g2706 670 SUPERFAMILY RING/U-box 256 334 - -
Lac7g2706 670 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac7g2706 670 Gene3D - 337 492 IPR011989 -
Lac7g2706 670 MobiDBLite consensus disorder prediction 227 254 - -
Lac7g2706 670 CDD MLKL_NTD 10 138 - -
Lac7g2706 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
Lac7g2706 670 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac7g2706 670 MobiDBLite consensus disorder prediction 649 670 - -
Lac7g2706 670 CDD RING-Ubox_PUB 259 311 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1443 Lac-Chr13:14259800 Lac7g2706 Lac-Chr7:46146918 1.70E-61 dispersed
Lac5g2111 Lac-Chr5:39745991 Lac7g2706 Lac-Chr7:46146918 2.00E-26 dispersed
Lac6g0745 Lac-Chr6:6319465 Lac7g2706 Lac-Chr7:46146918 1.60E-37 dispersed
Lac6g1867 Lac-Chr6:31564155 Lac7g2706 Lac-Chr7:46146918 1.80E-30 dispersed
Lac7g2706 Lac-Chr7:46146918 Lac8g2874 Lac-Chr8:45883322 2.50E-55 dispersed
Lac13g0683 Lac-Chr13:5210399 Lac7g2706 Lac-Chr7:46146918 1.30E-119 transposed
Lac1g3151 Lac-Chr1:51752968 Lac7g2706 Lac-Chr7:46146918 1.40E-12 transposed
Lac6g0084 Lac-Chr6:734020 Lac7g2706 Lac-Chr7:46146918 8.50E-16 transposed
Lac9g1894 Lac-Chr9:38710060 Lac7g2706 Lac-Chr7:46146918 3.80E-85 transposed
Lac9g2482 Lac-Chr9:43658692 Lac7g2706 Lac-Chr7:46146918 9.90E-16 transposed
Lac7g2706 Lac-Chr7:46146918 Lac9g2481 Lac-Chr9:43655656 9.20E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2706 K27628 - csv:101218572 1121.69