Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g2763 | ATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCTAGAGTTGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTCGTCGCCGGTGTTGCTCCGTCCGAGACGGATACCGTTGCGAAGCGGCAGAAGTTGGAGGATCGAGCCGCGTCGGTTTCCAGAGATTGCGATAACGCTGTTGAGAATTGTGATTCCAGCGAGGAAGAGACCGTCGGGAGATTTGTGGTTCCGACGAAGAGACAGACCTCGGTTGTACCGACGGAATCTCCTTGTGTTCCTCTCGACGGAGAGATTCCGAAGTTCGGATTCTCTTCTGTTTGCGGAAGGCGGAGAGATATGGAGGATGCAGTGGCCGTTCATCCATCGCTGTGTTCTACAGAAAAGGAAGGCACCGATAAGTTGCACTTCTTCGGTGTTTACGACGGCCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGAGCGACTGCACGAACTTGTGAAGGAGGAGTTGAATACGGAGGAGAACGAAGAGTCTTCCGCCGCCGCCGCCGGATGGGACGGCGCTATGAAGAGAATCTTCATGCGTATGGACAAGGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAATTGCAGATGCGAACTGCAGTCGCCGGATTGTGATGCCGTTGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCTCGAGCCGTTCTCTGCCGCAACGGCAAGGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGTCCCGACGAACTGAACCGGATCGAGGAAGCCGGCGGGCGAGTGATCTACTGGGACGGACCGAGAGTCCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAACTATCTGAAACCGTACGTGATATCGGAGCCGGAGGTGACGATAACAGATCGGACGGCGGAGGACGAGTGCCTGATTCTGGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCATGTGGAGTGGCGAGCATGTGCCTCCGAGGGAAGGCGGAGGCGCAGTCGCCGGGGTCGCCGTCGACGGCGGTGGGGACGGCGGCCGGGAGCTCGGATAAGGCCTGCAATGATGCGTCGATGCTACTGACGAAGCTGGCGCTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTAG | 1218 | 58.05 | MSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETDTVAKRQKLEDRAASVSRDCDNAVENCDSSEEETVGRFVVPTKRQTSVVPTESPCVPLDGEIPKFGFSSVCGRRRDMEDAVAVHPSLCSTEKEGTDKLHFFGVYDGHGCSHVAMRCKERLHELVKEELNTEENEESSAAAAGWDGAMKRIFMRMDKEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELNRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITDRTAEDECLILASDGLWDVVPNETACGVASMCLRGKAEAQSPGSPSTAVGTAAGSSDKACNDASMLLTKLALARHSTDNVSVVVVDLKRDT | 405 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 46777990 | 46779583 | - | Lag0023280.1 | Lac7g2763 | 615664 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g2763 | 405 | SUPERFAMILY | PP2C-like | 101 | 402 | IPR036457 | - | |
| Lac7g2763 | 405 | Gene3D | - | 94 | 405 | IPR036457 | - | |
| Lac7g2763 | 405 | PANTHER | PROTEIN PHOSPHATASE | 63 | 400 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Lac7g2763 | 405 | Coils | Coil | 44 | 64 | - | - | |
| Lac7g2763 | 405 | SMART | PP2C_4 | 94 | 399 | IPR001932 | - | |
| Lac7g2763 | 405 | Pfam | Protein phosphatase 2C | 103 | 393 | IPR001932 | - | |
| Lac7g2763 | 405 | ProSiteProfiles | PPM-type phosphatase domain profile. | 102 | 401 | IPR001932 | - | |
| Lac7g2763 | 405 | FunFam | Protein phosphatase 2C 37 | 97 | 405 | - | - | |
| Lac7g2763 | 405 | ProSitePatterns | PPM-type phosphatase domain signature. | 138 | 146 | IPR000222 | GO:0043169(InterPro) | |
| Lac7g2763 | 405 | CDD | PP2Cc | 102 | 401 | IPR001932 | - | |
| Lac7g2763 | 405 | Coils | Coil | 152 | 172 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g3027 | Lac-Chr5:48155987 | Lac7g2763 | Lac-Chr7:46777990 | 1.60E-66 | dispersed | |
| Lac7g2763 | Lac-Chr7:46777990 | Lac8g1754 | Lac-Chr8:35770777 | 2.50E-34 | dispersed | |
| Lac10g2264 | Lac-Chr10:34333179 | Lac7g2763 | Lac-Chr7:46777990 | 8.60E-24 | transposed | |
| Lac12g2456 | Lac-Chr12:41629940 | Lac7g2763 | Lac-Chr7:46777990 | 6.20E-65 | transposed | |
| Lac13g1146 | Lac-Chr13:10049283 | Lac7g2763 | Lac-Chr7:46777990 | 3.60E-32 | transposed | |
| Lac5g2869 | Lac-Chr5:46920239 | Lac7g2763 | Lac-Chr7:46777990 | 2.00E-50 | transposed | |
| Lac5g2870 | Lac-Chr5:46927071 | Lac7g2763 | Lac-Chr7:46777990 | 2.10E-21 | transposed | |
| Lac6g0172 | Lac-Chr6:1385544 | Lac7g2763 | Lac-Chr7:46777990 | 2.20E-65 | transposed | |
| Lac7g2763 | Lac-Chr7:46777990 | Lac8g2934 | Lac-Chr8:46361483 | 1.40E-101 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac7g2763 | K14497 | - | csv:101206871 | 624.394 |