Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g2848 | ATGTCGGTCTCCGTCGCGGTTTCGAATTCGCCGGGGTTTTCCCCTTCGTCGTCGATGTTCTGCAACAAGACGTCGATCATTTCTCCGGCGCCGGAGGCTCTGACGCTGACGTTGGCCCATTTGAAATCGTCTCAGGCTTCGTCGTCTTGCTCCTCCTCGCCTTCTTCCCCTTCTTCCCCTTTCCGGCTTAGGTTTCCCAAGCCCCCTTCTGGGCTCTCCGCCGCCGTGGCCGTGGCTTCCACTTCTTCTCCGTCGTCGGCCTCGTCCAACGCCATCTTGAAGAGGAAGAGACCGGCGAGGTTGGATATTCCCTTGACGCCGTTGAGTTTCGGCGCTCCGGTGATGCCGTCGCCGTCGTCGTTCAGGGAGGTCGTGGAGGCCGAGAGAGATGGGTACTCCGTGTATTGCAAGAGAGGGAGGAGGAGAATCTCCATGGAAGATCGGTATTCCGCCGCCGTTGATCTTCGAGGCGATTCCAAAGAGGCGTTTTTTGGTGTGTTTGATGGACATGGTGGAGCGAAGGCTGCTGAATTTGCAGCCAAAAACTTGGAGAAGAACGTGTTGAATGAACTGGAAAGAATGGCTGATAACGGGACAGATTTCGAACAAGCCATCAAACATGGCTACCTCACCACAGATTCCGATTTCCTCAAGGAGGATCAGCGCGGTGGCTCTTGTTGTGTGACAGCCTTGATCAAGAGAGGCAACCTCGTTGTCTCGAATGTCGGTGACTGCCGTGCCGTTCTCAGCAGTGAGGGCGTCGCCGAAGCCATCACCTCCGACCACCGCCCGTCCCGGGAAGACGAACGGCACCGAATCGAGTCGAGGGGTGGATATGTTGATCTGTGCAATGGCGTTTGGAGAGTGCAGGGATCTCTGGCTGTGACAAGAGGAATTGGTGATGCTCACCTCAAACAATGGGTGATAGCGGAGCCGGAGACGAGGGCGATTCGGATCGAGCCTCGACACGAGTTCGTGATCTTGGCCTCGGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATTGCACATCCATTGTGTGTAGGGATTGAGAAGCCAGAGCCATTGGAGGCCTGTAAAAAGCTTGTGGAGCTATCACTTTCAAGGGGCTCAGTGGATGACATTAGTGTAGTACTAATTCAATTGGCTAACTTCATTTAA | 1170 | 54.7 | MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEALTLTLAHLKSSQASSSCSSSPSSPSSPFRLRFPKPPSGLSAAVAVASTSSPSSASSNAILKRKRPARLDIPLTPLSFGAPVMPSPSSFREVVEAERDGYSVYCKRGRRRISMEDRYSAAVDLRGDSKEAFFGVFDGHGGAKAAEFAAKNLEKNVLNELERMADNGTDFEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKRGNLVVSNVGDCRAVLSSEGVAEAITSDHRPSREDERHRIESRGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETRAIRIEPRHEFVILASDGLWETVSNQEAVDIAHPLCVGIEKPEPLEACKKLVELSLSRGSVDDISVVLIQLANFI | 389 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 47619653 | 47621300 | + | Lag0023365.1 | Lac7g2848 | 615749 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g2848 | 389 | ProSitePatterns | PPM-type phosphatase domain signature. | 163 | 171 | IPR000222 | GO:0043169(InterPro) | |
Lac7g2848 | 389 | SMART | PP2C_4 | 124 | 383 | IPR001932 | - | |
Lac7g2848 | 389 | CDD | PP2Cc | 131 | 385 | IPR001932 | - | |
Lac7g2848 | 389 | PANTHER | PROTEIN PHOSPHATASE | 119 | 383 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Lac7g2848 | 389 | ProSiteProfiles | PPM-type phosphatase domain profile. | 131 | 385 | IPR001932 | - | |
Lac7g2848 | 389 | SUPERFAMILY | PP2C-like | 131 | 386 | IPR036457 | - | |
Lac7g2848 | 389 | Gene3D | - | 132 | 388 | IPR036457 | - | |
Lac7g2848 | 389 | SMART | PP2C_SIG_2 | 140 | 385 | IPR001932 | - | |
Lac7g2848 | 389 | FunFam | probable protein phosphatase 2C 25 | 124 | 388 | - | - | |
Lac7g2848 | 389 | Pfam | Protein phosphatase 2C | 136 | 378 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g1146 | Lac-Chr13:10049283 | Lac7g2848 | Lac-Chr7:47619653 | 2.80E-101 | dispersed | |
Lac6g0688 | Lac-Chr6:5849288 | Lac7g2848 | Lac-Chr7:47619653 | 1.30E-62 | dispersed | |
Lac7g2848 | Lac-Chr7:47619653 | Lac8g3063 | Lac-Chr8:47318245 | 1.10E-68 | dispersed | |
Lac7g2848 | Lac-Chr7:47619653 | Lac2g0725 | Lac-Chr2:5585682 | 1.30E-35 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac7g2848 | K17506 | - | csv:101207841 | 651.744 |