Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2848 ATGTCGGTCTCCGTCGCGGTTTCGAATTCGCCGGGGTTTTCCCCTTCGTCGTCGATGTTCTGCAACAAGACGTCGATCATTTCTCCGGCGCCGGAGGCTCTGACGCTGACGTTGGCCCATTTGAAATCGTCTCAGGCTTCGTCGTCTTGCTCCTCCTCGCCTTCTTCCCCTTCTTCCCCTTTCCGGCTTAGGTTTCCCAAGCCCCCTTCTGGGCTCTCCGCCGCCGTGGCCGTGGCTTCCACTTCTTCTCCGTCGTCGGCCTCGTCCAACGCCATCTTGAAGAGGAAGAGACCGGCGAGGTTGGATATTCCCTTGACGCCGTTGAGTTTCGGCGCTCCGGTGATGCCGTCGCCGTCGTCGTTCAGGGAGGTCGTGGAGGCCGAGAGAGATGGGTACTCCGTGTATTGCAAGAGAGGGAGGAGGAGAATCTCCATGGAAGATCGGTATTCCGCCGCCGTTGATCTTCGAGGCGATTCCAAAGAGGCGTTTTTTGGTGTGTTTGATGGACATGGTGGAGCGAAGGCTGCTGAATTTGCAGCCAAAAACTTGGAGAAGAACGTGTTGAATGAACTGGAAAGAATGGCTGATAACGGGACAGATTTCGAACAAGCCATCAAACATGGCTACCTCACCACAGATTCCGATTTCCTCAAGGAGGATCAGCGCGGTGGCTCTTGTTGTGTGACAGCCTTGATCAAGAGAGGCAACCTCGTTGTCTCGAATGTCGGTGACTGCCGTGCCGTTCTCAGCAGTGAGGGCGTCGCCGAAGCCATCACCTCCGACCACCGCCCGTCCCGGGAAGACGAACGGCACCGAATCGAGTCGAGGGGTGGATATGTTGATCTGTGCAATGGCGTTTGGAGAGTGCAGGGATCTCTGGCTGTGACAAGAGGAATTGGTGATGCTCACCTCAAACAATGGGTGATAGCGGAGCCGGAGACGAGGGCGATTCGGATCGAGCCTCGACACGAGTTCGTGATCTTGGCCTCGGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATTGCACATCCATTGTGTGTAGGGATTGAGAAGCCAGAGCCATTGGAGGCCTGTAAAAAGCTTGTGGAGCTATCACTTTCAAGGGGCTCAGTGGATGACATTAGTGTAGTACTAATTCAATTGGCTAACTTCATTTAA 1170 54.7 MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEALTLTLAHLKSSQASSSCSSSPSSPSSPFRLRFPKPPSGLSAAVAVASTSSPSSASSNAILKRKRPARLDIPLTPLSFGAPVMPSPSSFREVVEAERDGYSVYCKRGRRRISMEDRYSAAVDLRGDSKEAFFGVFDGHGGAKAAEFAAKNLEKNVLNELERMADNGTDFEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKRGNLVVSNVGDCRAVLSSEGVAEAITSDHRPSREDERHRIESRGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETRAIRIEPRHEFVILASDGLWETVSNQEAVDIAHPLCVGIEKPEPLEACKKLVELSLSRGSVDDISVVLIQLANFI 389
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 47619653 47621300 + Lag0023365.1 Lac7g2848 615749
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2848 389 ProSitePatterns PPM-type phosphatase domain signature. 163 171 IPR000222 GO:0043169(InterPro)
Lac7g2848 389 SMART PP2C_4 124 383 IPR001932 -
Lac7g2848 389 CDD PP2Cc 131 385 IPR001932 -
Lac7g2848 389 PANTHER PROTEIN PHOSPHATASE 119 383 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac7g2848 389 ProSiteProfiles PPM-type phosphatase domain profile. 131 385 IPR001932 -
Lac7g2848 389 SUPERFAMILY PP2C-like 131 386 IPR036457 -
Lac7g2848 389 Gene3D - 132 388 IPR036457 -
Lac7g2848 389 SMART PP2C_SIG_2 140 385 IPR001932 -
Lac7g2848 389 FunFam probable protein phosphatase 2C 25 124 388 - -
Lac7g2848 389 Pfam Protein phosphatase 2C 136 378 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1146 Lac-Chr13:10049283 Lac7g2848 Lac-Chr7:47619653 2.80E-101 dispersed
Lac6g0688 Lac-Chr6:5849288 Lac7g2848 Lac-Chr7:47619653 1.30E-62 dispersed
Lac7g2848 Lac-Chr7:47619653 Lac8g3063 Lac-Chr8:47318245 1.10E-68 dispersed
Lac7g2848 Lac-Chr7:47619653 Lac2g0725 Lac-Chr2:5585682 1.30E-35 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2848 K17506 - csv:101207841 651.744