Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g2850 | ATGGCGAAAACGACGGCGCTTTCTTGGTCGAGAAGTAAGTTCGTGATCGGAAACGGCTCGTTTGGGACGGTCACCGTCGGAGTCGCGAAATCGGACGGTCGGATTTTCGCGGTCAAGTCCGTGGAACAGAGTGTTGGATTCCGGCGCCAAATTCAATGTTTAGAGAACGAAATTCGAATTCTCCGATCGTTGGATTCGCCCTACATCGTGGGGTTTCTCGGCGATGACGTTTCCGACGAGTCTCCGTCGTTTCGGAATCTGCATATGGAGTATTTGCCTGGTGGCACTGTCGCCGATGACCCCACCGGCGCCGGCGATGAGACGCTCTTACGGGCGAGGACGCGGTGTATTGTTTCGGCTCTGGGTTATGTTCATTCGAAGGGAATTGTCCATTGTGATGTTAAGGGGAGGAACGTTTTGATCGGAATGAATCCGGGTTTTGTGAAATTGGCCGATTTCGGCTCTGCGATTGAAGTCGGCGGCGGCGGCGGCGGCGACACGTGTCAGGCGCCACGTGGAAGTCCGCTGTGGATGGCGCCGGAGGTGGTTCGAGGGGAGTTTCAGGGGCCGGAATCGGACGTTTGGTCGGTTGGGTGTACGGTCATTGAAATGGTCACCGGAAAACCAGCGTGGGAAGATTTCGGGGCCGATACGCTGAGACGAATCGGCTTTTCCGACGAGTTGCCGGAGTTTCCGACTGGGTTGTCGGAACTCGGCCGGGATTTTCTCCGGAAGTGTCTAAGAAGAGATCCGAGTGAGCGGTGGAGCTGCGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGTCGCCGGAGATCGCCGGCGGGAATTCCCCCCGGTGCGTGCTGGACTGGGTCAACGCCGAGTTCGACGATGACGAGGAAGAAATCCCCATCTCCGGCGAATCCTCTGGCGGCGGCGGCGGCCAGGAAAGTGAGATCTCCGGCAAGGGCAGAATTGGGAAATTGAGTACGAGTGAATGGCCGGATTGGGAATCGGACGGGTGGTCGCCGGTGAGAGGGCTCTGCAGTGAAGCGGCGGCGAGCTTAGAAGAAGGGGAAGGGTAG | 1065 | 58.22 | MAKTTALSWSRSKFVIGNGSFGTVTVGVAKSDGRIFAVKSVEQSVGFRRQIQCLENEIRILRSLDSPYIVGFLGDDVSDESPSFRNLHMEYLPGGTVADDPTGAGDETLLRARTRCIVSALGYVHSKGIVHCDVKGRNVLIGMNPGFVKLADFGSAIEVGGGGGGDTCQAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLRRIGFSDELPEFPTGLSELGRDFLRKCLRRDPSERWSCDRLLQHPFLAASPEIAGGNSPRCVLDWVNAEFDDDEEEIPISGESSGGGGGQESEISGKGRIGKLSTSEWPDWESDGWSPVRGLCSEAAASLEEGEG | 354 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 47648336 | 47649400 | + | Lag0023367.1 | Lac7g2850 | 615751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g2850 | 354 | CDD | STKc_MAPKKK | 8 | 266 | - | - | |
| Lac7g2850 | 354 | SMART | serkin_6 | 10 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac7g2850 | 354 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 129 | 141 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac7g2850 | 354 | Gene3D | Transferase(Phosphotransferase) domain 1 | 7 | 288 | - | - | |
| Lac7g2850 | 354 | FunFam | Serine threonine protein kinase putative | 7 | 306 | - | - | |
| Lac7g2850 | 354 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 271 | IPR011009 | - | |
| Lac7g2850 | 354 | ProSitePatterns | Protein kinases ATP-binding region signature. | 16 | 39 | IPR017441 | GO:0005524(InterPro) | |
| Lac7g2850 | 354 | Pfam | Protein kinase domain | 15 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac7g2850 | 354 | MobiDBLite | consensus disorder prediction | 295 | 338 | - | - | |
| Lac7g2850 | 354 | ProSiteProfiles | Protein kinase domain profile. | 10 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac7g2850 | 354 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 4 | 267 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g3195 | Lac-Chr1:52052585 | Lac7g2850 | Lac-Chr7:47648336 | 5.90E-56 | dispersed | |
| Lac7g2850 | Lac-Chr7:47648336 | Lac9g2041 | Lac-Chr9:40031485 | 3.40E-56 | dispersed | |
| Lac7g2850 | Lac-Chr7:47648336 | Lac12g0574 | Lac-Chr12:6100365 | 1.80E-57 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86349 | PF00069 | Pkinase | 1.50E-52 | CL0016 | Lac | PK |
Pathway information