Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2888 ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCAAATTCTCATCCTTCTTTCACTTTCTCCACTCATCCTTTCATGACTACTTCTTACTCTGACCTTCTCGCCTCCGCCACCAACGATCCCCCTTCCTCCGCCGCTGCTCTCCGGGGCTCCGCCACCGGAGTTCCCAATCCGGCCGAGCTCCTTGATTCCCCTGTTCTACTCAGTGCTTCTCATGTTCTGCCGTCGCCGACCACCGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCGGGGTATAATCAGCAGAGCATCAAGGAAGAGAATAAGTTCTTGTCTAACTTCTCTTTTCAAACTCAATCGTCTAAGCTGCCGCCAACATCTTTTGAGCCTTCATCCACCACAGCTCCGACGACTCAGGGATGGAGTTTCCAAGAACAGGGAAAGAAACAGGACGGATTTTTGTCGGAGAAGAATATGGTCAAGCCGGAGTTCGGATCGATGCAGAGCTTCTCGCCGGAATATGGGGTTGTGCAAAACCAGAGCCAGAACAACGGCGGCGGGGAGTTTCAGTCCGACTACGGCAACAATTACCCTCAACAATCTCAGACGTTGAATCGGAGGTCCGACGACGGCTACAACTGGAGAAAATACGGCCAGAAACAGGTCAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAATTGCCCAACGAAGAAAAAGGTCGAAAAATCCTTAGATGGACAGATCACAGAGATCGTTTACAAAGGCAGCCATAACCACCCGAAGCCCCAATCCACGAGGAGGTCGTCGTTGTCGTCGGCCGGTTCTTCCCACGCCCTGGCGGCTTCAAATCCGGCCGCCAACGACATGGGGGATCAGTCATTCACAACCCAAGGAAGCGGCCAATTCGACGGCGTCGCAACGCCGGAGAATTCCTCCATTTCAATCGGCGACGACGACTTCGATCGGAGCTCCCAGAAGAGCAAATCCGGAGGGGACGATTTCGATGAGGACGAACCAGAGGCGAAGAGATGGCGAAGGGATGGTGACAACAGCGAAGGGATTTCTGCAGCGGGTAGCCGGACCGTGAGAGAGCCGAGAGTCGTCGTTCAAACCACCAGCGACATCGACATTCTCGACGACGGTTACCGGTGGAGAAAGTACGGCCAGAAAGTGGTGAAAGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAACCCAGGATGCCCAGTAAGAAAGCATGTAGAGAGAGCGTCACACGATCTAAGGGCAGTGATCACCACCTACGAAGGCAAGCACAACCACGACGTCCCACCGGCACGTGGCAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCGCAGAGCGAGCCACCGGCCGCCGCAATCCGCCCATCGGCGATGACCCATCAGTCAAACAACGGCGGCGGTGGCGGCGGCAACAACAACAACAACCTTCTGCAGGGTCTTCGGCTGCAGCAATCTTCAGAGAACCAAACGCCATTCACACTGGAAATGGTGCAAAACCCGAATGGATTTTCATTCCCGGAATTTGGAAACTCCATGGGAATGGGATCGTTCATGAACCAAACACAATCCAACGATAATTTGTTCAGTAGAGCCAAAGAAGAGCCAAGAGATCACGACACATTCTTCCAATCTCTCCTATGTTGA 1674 53.17 MASSSGSLDTSANSHPSFTFSTHPFMTTSYSDLLASATNDPPSSAAALRGSATGVPNPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKFLSNFSFQTQSSKLPPTSFEPSSTTAPTTQGWSFQEQGKKQDGFLSEKNMVKPEFGSMQSFSPEYGVVQNQSQNNGGGEFQSDYGNNYPQQSQTLNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVEKSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHALAASNPAANDMGDQSFTTQGSGQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRRDGDNSEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPQSEPPAAAIRPSAMTHQSNNGGGGGGNNNNNLLQGLRLQQSSENQTPFTLEMVQNPNGFSFPEFGNSMGMGSFMNQTQSNDNLFSRAKEEPRDHDTFFQSLLC 557
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 47981406 47983586 - Lag0023405.1 Lac7g2888 615789
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2888 557 ProSiteProfiles WRKY domain profile. 205 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 SUPERFAMILY WRKY DNA-binding domain 203 263 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 Gene3D WRKY domain 191 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 MobiDBLite consensus disorder prediction 34 60 - -
Lac7g2888 557 MobiDBLite consensus disorder prediction 173 209 - -
Lac7g2888 557 MobiDBLite consensus disorder prediction 430 487 - -
Lac7g2888 557 MobiDBLite consensus disorder prediction 254 362 - -
Lac7g2888 557 MobiDBLite consensus disorder prediction 117 143 - -
Lac7g2888 557 FunFam WRKY transcription factor 195 264 - -
Lac7g2888 557 MobiDBLite consensus disorder prediction 173 204 - -
Lac7g2888 557 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 117 477 IPR044810 GO:0003700(InterPro)
Lac7g2888 557 MobiDBLite consensus disorder prediction 259 315 - -
Lac7g2888 557 SUPERFAMILY WRKY DNA-binding domain 371 439 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 Gene3D WRKY domain 366 432 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 ProSiteProfiles WRKY domain profile. 374 439 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 MobiDBLite consensus disorder prediction 316 351 - -
Lac7g2888 557 MobiDBLite consensus disorder prediction 466 487 - -
Lac7g2888 557 Pfam WRKY DNA -binding domain 205 261 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 Pfam WRKY DNA -binding domain 380 437 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 FunFam WRKY transcription factor 33 366 432 - -
Lac7g2888 557 SMART WRKY_cls 204 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 SMART WRKY_cls 379 438 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g2888 557 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0214 Lac-Chr3:1531808 Lac7g2888 Lac-Chr7:47981406 5.50E-39 dispersed
Lac5g2527 Lac-Chr5:43827611 Lac7g2888 Lac-Chr7:47981406 1.90E-20 dispersed
Lac6g0593 Lac-Chr6:4957415 Lac7g2888 Lac-Chr7:47981406 1.80E-17 dispersed
Lac7g2888 Lac-Chr7:47981406 Lac8g2724 Lac-Chr8:44682047 2.20E-65 dispersed
Lac10g3270 Lac-Chr10:46668075 Lac7g2888 Lac-Chr7:47981406 1.80E-89 transposed
Lac7g2888 Lac-Chr7:47981406 Lac9g2348 Lac-Chr9:42749885 6.40E-89 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24232 PF03106 WRKY 3.40E-25 CL0274 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2888 K13424 - csv:101207158 955.281