Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g2888 | ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCAAATTCTCATCCTTCTTTCACTTTCTCCACTCATCCTTTCATGACTACTTCTTACTCTGACCTTCTCGCCTCCGCCACCAACGATCCCCCTTCCTCCGCCGCTGCTCTCCGGGGCTCCGCCACCGGAGTTCCCAATCCGGCCGAGCTCCTTGATTCCCCTGTTCTACTCAGTGCTTCTCATGTTCTGCCGTCGCCGACCACCGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCGGGGTATAATCAGCAGAGCATCAAGGAAGAGAATAAGTTCTTGTCTAACTTCTCTTTTCAAACTCAATCGTCTAAGCTGCCGCCAACATCTTTTGAGCCTTCATCCACCACAGCTCCGACGACTCAGGGATGGAGTTTCCAAGAACAGGGAAAGAAACAGGACGGATTTTTGTCGGAGAAGAATATGGTCAAGCCGGAGTTCGGATCGATGCAGAGCTTCTCGCCGGAATATGGGGTTGTGCAAAACCAGAGCCAGAACAACGGCGGCGGGGAGTTTCAGTCCGACTACGGCAACAATTACCCTCAACAATCTCAGACGTTGAATCGGAGGTCCGACGACGGCTACAACTGGAGAAAATACGGCCAGAAACAGGTCAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAATTGCCCAACGAAGAAAAAGGTCGAAAAATCCTTAGATGGACAGATCACAGAGATCGTTTACAAAGGCAGCCATAACCACCCGAAGCCCCAATCCACGAGGAGGTCGTCGTTGTCGTCGGCCGGTTCTTCCCACGCCCTGGCGGCTTCAAATCCGGCCGCCAACGACATGGGGGATCAGTCATTCACAACCCAAGGAAGCGGCCAATTCGACGGCGTCGCAACGCCGGAGAATTCCTCCATTTCAATCGGCGACGACGACTTCGATCGGAGCTCCCAGAAGAGCAAATCCGGAGGGGACGATTTCGATGAGGACGAACCAGAGGCGAAGAGATGGCGAAGGGATGGTGACAACAGCGAAGGGATTTCTGCAGCGGGTAGCCGGACCGTGAGAGAGCCGAGAGTCGTCGTTCAAACCACCAGCGACATCGACATTCTCGACGACGGTTACCGGTGGAGAAAGTACGGCCAGAAAGTGGTGAAAGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAACCCAGGATGCCCAGTAAGAAAGCATGTAGAGAGAGCGTCACACGATCTAAGGGCAGTGATCACCACCTACGAAGGCAAGCACAACCACGACGTCCCACCGGCACGTGGCAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCGCAGAGCGAGCCACCGGCCGCCGCAATCCGCCCATCGGCGATGACCCATCAGTCAAACAACGGCGGCGGTGGCGGCGGCAACAACAACAACAACCTTCTGCAGGGTCTTCGGCTGCAGCAATCTTCAGAGAACCAAACGCCATTCACACTGGAAATGGTGCAAAACCCGAATGGATTTTCATTCCCGGAATTTGGAAACTCCATGGGAATGGGATCGTTCATGAACCAAACACAATCCAACGATAATTTGTTCAGTAGAGCCAAAGAAGAGCCAAGAGATCACGACACATTCTTCCAATCTCTCCTATGTTGA | 1674 | 53.17 | MASSSGSLDTSANSHPSFTFSTHPFMTTSYSDLLASATNDPPSSAAALRGSATGVPNPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKFLSNFSFQTQSSKLPPTSFEPSSTTAPTTQGWSFQEQGKKQDGFLSEKNMVKPEFGSMQSFSPEYGVVQNQSQNNGGGEFQSDYGNNYPQQSQTLNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVEKSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHALAASNPAANDMGDQSFTTQGSGQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRRDGDNSEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPQSEPPAAAIRPSAMTHQSNNGGGGGGNNNNNLLQGLRLQQSSENQTPFTLEMVQNPNGFSFPEFGNSMGMGSFMNQTQSNDNLFSRAKEEPRDHDTFFQSLLC | 557 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 47981406 | 47983586 | - | Lag0023405.1 | Lac7g2888 | 615789 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g2888 | 557 | ProSiteProfiles | WRKY domain profile. | 205 | 263 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | SUPERFAMILY | WRKY DNA-binding domain | 203 | 263 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | Gene3D | WRKY domain | 191 | 264 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 34 | 60 | - | - | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 173 | 209 | - | - | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 430 | 487 | - | - | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 254 | 362 | - | - | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 117 | 143 | - | - | |
Lac7g2888 | 557 | FunFam | WRKY transcription factor | 195 | 264 | - | - | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 173 | 204 | - | - | |
Lac7g2888 | 557 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 117 | 477 | IPR044810 | GO:0003700(InterPro) | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 259 | 315 | - | - | |
Lac7g2888 | 557 | SUPERFAMILY | WRKY DNA-binding domain | 371 | 439 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | Gene3D | WRKY domain | 366 | 432 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | ProSiteProfiles | WRKY domain profile. | 374 | 439 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 316 | 351 | - | - | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 466 | 487 | - | - | |
Lac7g2888 | 557 | Pfam | WRKY DNA -binding domain | 205 | 261 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | Pfam | WRKY DNA -binding domain | 380 | 437 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | FunFam | WRKY transcription factor 33 | 366 | 432 | - | - | |
Lac7g2888 | 557 | SMART | WRKY_cls | 204 | 262 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | SMART | WRKY_cls | 379 | 438 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g2888 | 557 | MobiDBLite | consensus disorder prediction | 73 | 95 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0214 | Lac-Chr3:1531808 | Lac7g2888 | Lac-Chr7:47981406 | 5.50E-39 | dispersed | |
Lac5g2527 | Lac-Chr5:43827611 | Lac7g2888 | Lac-Chr7:47981406 | 1.90E-20 | dispersed | |
Lac6g0593 | Lac-Chr6:4957415 | Lac7g2888 | Lac-Chr7:47981406 | 1.80E-17 | dispersed | |
Lac7g2888 | Lac-Chr7:47981406 | Lac8g2724 | Lac-Chr8:44682047 | 2.20E-65 | dispersed | |
Lac10g3270 | Lac-Chr10:46668075 | Lac7g2888 | Lac-Chr7:47981406 | 1.80E-89 | transposed | |
Lac7g2888 | Lac-Chr7:47981406 | Lac9g2348 | Lac-Chr9:42749885 | 6.40E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24232 | PF03106 | WRKY | 3.40E-25 | CL0274 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac7g2888 | K13424 | - | csv:101207158 | 955.281 |