Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2915 ATGGCCTCCAACCGCTGCATGAACACTTCTTGCGGAGCCGCCACGCCGCACGAATGGACCAAGGGATGGCCTCTCGGATCCGCCGGATTCGCACGTCTCTGCCTCAACTGCGGATCTGCTTATGAAAAGTTAGTCTTCTGTGATACATATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTAGCAAGAGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGTACTAGCTGTGTGAAAAGATCTCGACTTGATGTGATTCGGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGTTGGCCTTCTGCGACCTGCTTCTGTTGAGGATCAAGTGGTTCAAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGTCAAATGAAACCGACCATTTTCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAAAGGAGAAAATCTCAGGAGCTCATTTGGGGAAGTTGGAACAAGCTTTTTTAATATGACTAAACTACCTGTTAAATGTCAGCCATCTGTTGGTTTGATAACGTATTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGATATGCAAGAATCTCTAAGTCAGCCGTCGTTAAATATAACTTTGGGAGTTCCATTAGGTACACCGAACTTTGTGGTACCCTTTTCAGGGAGTGCTGCTGAAGAGGATGAAAAGAGCATTCTGCCATTTCAACCGGGCCAAAGATCTCGTCCAATTTTTCCCAAGCCCTTAAAGACTGGGACCACAGTTAATTCTGAAACAAGAAAGGGAATGGCTCCTCTGGTGCGTATTGCTCGGCCACCAGCTGAAGGTCGGGGTAAGAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATATCTCAATCAGAAGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTTTGGAGGGTGTTACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCCACTGATATACAGGATGCCAAGATCTCTACACTTCCCAATGGCTCTCATTCGGGTGACGCCTCATTCTCTAGGGTCTGTCAGAATCTGCCTTTACGAGCTGAAGGAGAGATTAGTTTGCATAAAATTGAAAATTTTGGAGGGAGGACAAATGATGCTTCAGGACAACAACCAATGTTAACCATGGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAAAATAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACATGGGAAGAAGCTCAAGATCTACTTCGCCCTCCACCAAGTGCAAATCCCACCATCGTCACTATCGATGACCATGAATTCGAAGAGTATGATGAACCTCCAGTATTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAGCAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGACTTGTTCTGATAATGTTTGGGATTTGAGCAGGTGTACATGTTCCGCACCGGAAGAGATCAGCACAAAGGAACAGGAGAATCTTCTAAGAGCAAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTGCTCAAGAACTCGAGCCTTCTGGTTTGGATGCACTGGCCAGTGCTGCTGTTCTAGGTGATAGTATGGCCGACTTACAGGAGTCGGGTACAACGACTAGACATCCTCGACACCGACCAGGATGCACTTGCATTGTGTGCATTCAGCCTCCAAGTGGGAAGGGAAAGCATAAATCCACTTGCACATGCAATGTGTGCTTGACTGTAAAACGCCGTTTTAAAACACTCATGCTGCGCAAGAAGAAACGCCAATCAGAACGTGAAGTGGAGACTCTGCTCAAGGATGGAAATCCACACTTCGATGAATCAGGAACGAGTGGGACACTGAGGGGTACATCTCTGCAAACAAACCATTCAGAAAACGAAGTCAGTCAGAGCAGGATAAGAGATGAGGAGGCTGCAAATAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGTGAGGACGTGCAACTAGAGGTAGCAGGATTAAGCATGATGAGTCTTGTTGAGGCTGCCAGCCAACCTTTAGATAGCTATTCAAAGCAAATCGGCGTCTGCAGCATCACGAGTGAGCAGCAGTCCAGTCAACCAAGTAGTGTGGAGAGTGAGAGACGCCTGTCTGATGAAGCGTGTCATGGATCAGCACACGAGAGCACAAGTGATGGATGCAGAGAGCACCATCGAGATTGA 2613 45.43 MASNRCMNTSCGAATPHEWTKGWPLGSAGFARLCLNCGSAYEKLVFCDTYHLEETGWRDCSFCSKRIHCGCIASKSMFECLDYGGIGCTSCVKRSRLDVIRRDEISNGFDAVTVGNVGLLRPASVEDQVVQNGINEEKLLQLCNIMESNETDHFQQSQRVDRSASPAQNKGENLRSSFGEVGTSFFNMTKLPVKCQPSVGLITYSKLDTSRPHLELKDMQESLSQPSLNITLGVPLGTPNFVVPFSGSAAEEDEKSILPFQPGQRSRPIFPKPLKTGTTVNSETRKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDIQDAKISTLPNGSHSGDASFSRVCQNLPLRAEGEISLHKIENFGGRTNDASGQQPMLTMEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWTCSDNVWDLSRCTCSAPEEISTKEQENLLRASKDFKKRKIMKSQKSAQELEPSGLDALASAAVLGDSMADLQESGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDGNPHFDESGTSGTLRGTSLQTNHSENEVSQSRIRDEEAANSSGQIDLNCHPDREDVQLEVAGLSMMSLVEAASQPLDSYSKQIGVCSITSEQQSSQPSSVESERRLSDEACHGSAHESTSDGCREHHRD 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48186570 48195390 - Lag0023432.1 Lac7g2915 615816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2915 870 ProSiteProfiles B3 DNA-binding domain profile. 335 436 IPR003340 GO:0003677(InterPro)
Lac7g2915 870 MobiDBLite consensus disorder prediction 830 870 - -
Lac7g2915 870 MobiDBLite consensus disorder prediction 260 281 - -
Lac7g2915 870 MobiDBLite consensus disorder prediction 747 768 - -
Lac7g2915 870 Gene3D - 570 622 - -
Lac7g2915 870 MobiDBLite consensus disorder prediction 725 792 - -
Lac7g2915 870 MobiDBLite consensus disorder prediction 727 743 - -
Lac7g2915 870 Gene3D - 313 440 IPR015300 -
Lac7g2915 870 MobiDBLite consensus disorder prediction 151 174 - -
Lac7g2915 870 SMART B3_2 335 435 IPR003340 GO:0003677(InterPro)
Lac7g2915 870 Pfam B3 DNA binding domain 335 434 IPR003340 GO:0003677(InterPro)
Lac7g2915 870 CDD B3_DNA 333 434 IPR003340 GO:0003677(InterPro)
Lac7g2915 870 SUPERFAMILY DNA-binding pseudobarrel domain 332 436 IPR015300 -
Lac7g2915 870 Pfam CW-type Zinc Finger 578 621 IPR011124 GO:0008270(InterPro)
Lac7g2915 870 MobiDBLite consensus disorder prediction 843 870 - -
Lac7g2915 870 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 845 - -
Lac7g2915 870 FunFam B3 domain-containing transcription repressor VAL1 313 440 - -
Lac7g2915 870 ProSiteProfiles Zinc finger CW-type profile. 573 623 IPR011124 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3300 Lac-Chr10:46851417 Lac7g2915 Lac-Chr7:48186570 5.70E-171 dispersed
Lac1g3292 Lac-Chr1:52696880 Lac7g2915 Lac-Chr7:48186570 9.70E-164 dispersed
Lac7g2915 Lac-Chr7:48186570 Lac8g2009 Lac-Chr8:38569571 4.30E-15 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24234 PF02362 B3 3.50E-16 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2915 K09287 - csv:101214226 1456.43