Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g2926 ATGTGTCGACCACAGGAGTGGGCATATATAGCCCTTCTGCTCCTGTACTTCTCGTCGTCCTTACTGCTCGTCGGTGCAGCAGAGCCGGTTACCCACCCCTCCGAAGTGGACGCTTTGCTTGACATCAAGAGAAGTTTGTTCGATCCTAATAGGAATCTGAGCAACTGGAACAAAGGAGACCCTTGTAGTTCAAACTGGACTGGTGTTCTGTGCTACAATACCACATTGGATGATAACTATCTACATGTTGTTGAATTGCAACTTCTAAATATGAGTTTATCAGGAAATTTATCACCTGCGCTTGGTCGTTTATCTTACCTGAAAGTCCTGGACTTTATGTGGAATGAGATAAGTGGAGGAATACCAGGAGAGATAGGCAATCTAACGTCCTTAGAACTGTTGCTTCTGAACGGGAACCGGTTGTCAGGTTTATTGCCTGAAGATCTTGGGAATCTTCTACATTTAGACAGAATACAGATTGACCAGAACCATATATCAGGACCAATACCCAAGACATTTGCAAACTTAAAATCAACAAAGCATTTCCACATGAACAACAACTCTATCAGTGGTGAAATCCCATCTGAGCTATCTGGATTGCCCAATCTTGTCCACCTCCTTCTTGACAATAACAACTTATCGGGGAAACTTCCACCAGAGTTGTTTCAATTACCAAACTTAGAAATACTTCAACTTGACAACAACAACTTCAGTGGGTCCACAATACCAGATTCTTATGGAAATATGACTAAATTGCTGAAATTGAGTCTAAGGAACTGTAGCTTGCAAGGACCAATTCCTGATCTGAGCAGGATAAAGAACCTCGGTTATCTAGATCTAAGTTCCAATCAACTAAGTGGATTCATACCAAGAAATAAACTTTCTGAGAATATCACAACCATCATTTTATCCAATAACCATCTTAGCGGCACCATACCATCCAGTCTCTCGGATCTACCTCATCTTCAGAAATTGTCAATTGCAAGTAATTCTTTAAACGGCTCTGTTCCATCCACCATATGGCAAAGCAGGACGCTCAATTCTTTGGACAGCCTTACAGTAGATCTGCAGAACAATAATTTTTCAAATATTTTGGGAAGCATCAATCTCCCTCAGAATGTCACTGTCTGGCTTTATGGAAATCCTGCTTGTTCTAATAACAGCCTGGTGGACTTTTGTGGATCTGAGAGTGAAGATATAATTGACATTCCAACAAATAACACTCTTGGATGTTCTGGGCCAATATGCCCACCTTCTTACGAATGTTACTCAGCAAAATGTCCCTCATCTTGTGTCTGTTCTGCACCTCTTCTTGTTGGATATCGTTTGAAAAGTCCTGGATTCTCACGTTTTAGTCCATATCAACGTATGTTTGAGGAGTACCTGACCAATGGTCTTAAGTTACATCTTGAACAATTGGACATTGGTTCTTCTGTGTGGGAAAAAGGGCCTCGATTAAGAATGAATCTGAAGCTTTTCCCTCTATACGTTGCTGATAGCAATAATTCTCAAATTTTCAATGACAGTGAGCTTTTACGAATTGTTTCCAAGTTTACAAATTGGAAGATCCAAGATAGCGATATATTTGGGCCATATGAACTTCTCAGCCTGACAATATCAGACGTTTATAAGAATGTATTTGTTACATCATCATCTGATTCTACTCTGAGTAAAGGGGCATTGGCTGGAATAATATTAGGAGCAATTGCTGGCGGAGCAATGCTATCTGCAATTGTTTTTATTTTCATTATAAGATCACGTGTGAGGGGCCGCCATATCTCAAGAAAGCGTTACTTGTCAAAAGCCTCCATAAAGATTGAGGGCGTAAAGGAGTTTGGTTACCGTGAAATGGCCCTAGCTACAAACAATTTTCATGATTCCACGGTAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATAGCACAGCTGTTGCTATCAAACGTGCCCAGGAGGGCTCGCTACAGGGTGAAAAAGAGTTCCTAACTGAAATACAATTATTGTCAAGATTACATCACAGAAATCTCGTGGCTTTGATTGGATATTGTGATGAAGAAGGGGAGCAGATGTTGGTTTATGAGTTTATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTAAATTCTGCAGAACCGTTGAGTTTTGCCACAAGATTGAAAGCTGCACTGGGTGCAGCTAAGGGAATTCTGTACCTGCACACGGAAGCTGATCCTCCAATATTCCACCGAGACATCAAGTCCAGCAACATATTATTAGACTCTAAATATATGGCAAAGGTTGCTGATTTTGGACTTTCACGACTTGCACCTCGACCAGATACAGAAGGCGATGTGCCTGCTCATGTATCGACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTCTTGACTCATAAATTAACCGATAAGAGTGATGTTTATAGTCTTGGTGTCGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTTAGGGAGGTTAACAGTGCATATCAGTCTGGAAAAATTTTCTCGATAATTGATGGTCGACTGGGATCTTATCCCGCTGAATGTGTGGAAAGGTTTGTGACATTGGCTCTGAAGTGTTGCCAAGACGATACAGACGCACGTCCTTCAATGGCAGAAGTTGTTCGAACACTTGAAAATGTTTGGCTTATGCTGCCCGAATCTGATACGAAAATCGCAGAGCCTTTGAACACCGATGTCATAAAAGTTACCAGTTCCCCATCTTCATCATCCAACATGAATAACTACTACATATCAGAAGTCTCTGGCAGTGACCTTGTAAGTGGAGTAACTCCCACCATCACACCCAGATAG 2859 41.55 MCRPQEWAYIALLLLYFSSSLLLVGAAEPVTHPSEVDALLDIKRSLFDPNRNLSNWNKGDPCSSNWTGVLCYNTTLDDNYLHVVELQLLNMSLSGNLSPALGRLSYLKVLDFMWNEISGGIPGEIGNLTSLELLLLNGNRLSGLLPEDLGNLLHLDRIQIDQNHISGPIPKTFANLKSTKHFHMNNNSISGEIPSELSGLPNLVHLLLDNNNLSGKLPPELFQLPNLEILQLDNNNFSGSTIPDSYGNMTKLLKLSLRNCSLQGPIPDLSRIKNLGYLDLSSNQLSGFIPRNKLSENITTIILSNNHLSGTIPSSLSDLPHLQKLSIASNSLNGSVPSTIWQSRTLNSLDSLTVDLQNNNFSNILGSINLPQNVTVWLYGNPACSNNSLVDFCGSESEDIIDIPTNNTLGCSGPICPPSYECYSAKCPSSCVCSAPLLVGYRLKSPGFSRFSPYQRMFEEYLTNGLKLHLEQLDIGSSVWEKGPRLRMNLKLFPLYVADSNNSQIFNDSELLRIVSKFTNWKIQDSDIFGPYELLSLTISDVYKNVFVTSSSDSTLSKGALAGIILGAIAGGAMLSAIVFIFIIRSRVRGRHISRKRYLSKASIKIEGVKEFGYREMALATNNFHDSTVVGQGGYGKVYKGILADSTAVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLVYEFMSNGTLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYMAKVADFGLSRLAPRPDTEGDVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVNSAYQSGKIFSIIDGRLGSYPAECVERFVTLALKCCQDDTDARPSMAEVVRTLENVWLMLPESDTKIAEPLNTDVIKVTSSPSSSSNMNNYYISEVSGSDLVSGVTPTITPR 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48259264 48312636 + Lag0023443.1 Lac7g2926 615827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g2926 952 SUPERFAMILY Protein kinase-like (PK-like) 610 925 IPR011009 -
Lac7g2926 952 PANTHER RECEPTOR-LIKE PROTEIN 55 53 894 - -
Lac7g2926 952 Gene3D Transferase(Phosphotransferase) domain 1 700 907 - -
Lac7g2926 952 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524(InterPro)
Lac7g2926 952 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515(InterPro)
Lac7g2926 952 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Lac7g2926 952 Pfam Protein kinase domain 625 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g2926 952 SMART LRR_typ_2 319 343 IPR003591 -
Lac7g2926 952 SMART LRR_typ_2 128 151 IPR003591 -
Lac7g2926 952 SMART LRR_typ_2 200 224 IPR003591 -
Lac7g2926 952 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 700 909 - -
Lac7g2926 952 FunFam Leucine-rich repeat protein kinase family protein 588 699 - -
Lac7g2926 952 CDD STKc_IRAK 630 895 - -
Lac7g2926 952 SUPERFAMILY L domain-like 48 412 - -
Lac7g2926 952 Gene3D Ribonuclease Inhibitor 295 386 IPR032675 -
Lac7g2926 952 Gene3D Ribonuclease Inhibitor 188 294 IPR032675 -
Lac7g2926 952 ProSiteProfiles Leucine-rich repeat profile. 274 295 IPR001611 GO:0005515(InterPro)
Lac7g2926 952 ProSiteProfiles Protein kinase domain profile. 624 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g2926 952 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Lac7g2926 952 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Lac7g2926 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g2926 952 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515(InterPro)
Lac7g2926 952 Pfam Leucine Rich Repeat 297 319 IPR001611 GO:0005515(InterPro)
Lac7g2926 952 Pfam Leucine Rich Repeat 274 291 IPR001611 GO:0005515(InterPro)
Lac7g2926 952 Pfam Leucine Rich Repeat 226 248 IPR001611 GO:0005515(InterPro)
Lac7g2926 952 SMART serkin_6 624 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g2926 952 Gene3D Phosphorylase Kinase; domain 1 595 699 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1759 Lac-Chr1:39077626 Lac7g2926 Lac-Chr7:48259264 7.10E-202 dispersed
Lac7g1602 Lac-Chr7:18816416 Lac7g2926 Lac-Chr7:48259264 4.10E-88 dispersed
Lac7g2926 Lac-Chr7:48259264 Lac9g0018 Lac-Chr9:294240 2.00E-82 dispersed
Lac9g2742 Lac-Chr9:45588445 Lac7g2926 Lac-Chr7:48259264 2.20E-27 transposed
Lac1g1768 Lac-Chr1:39199954 Lac7g2926 Lac-Chr7:48259264 1.00E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86350 PF00069 Pkinase 8.60E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g2926 - - - 0.0