Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0022 ATGGGTAAGGAGAAGGTTCACATTAACATTGTGGTCATTGGCCACGTCGACTCTGGCAAGTCGACCACCACTGGCCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCCTTCAAGTATGCCTGGGTGTTGGACAAGCTGAAGGCTGAACGTGAGCGTGGTATTACCATTGACATTGCCCTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTCATTGATGCTCCAGGTCATCGTGACTTCATCAAGAACATGATTACTGGTACTTCCCAAGCTGACTGTGCTGTTCTTATCATTGACTCAACTACCGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAGCATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACTCCCAAATACTCCAAGTCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACCAACCTCGACTGGTACAAGGGTCCAACCCTTCTTGAGGCACTCGACCAGGTCCACGAGCCCAAGAGACCATCTGACAAGCCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACCGTCCCAGTGGGTCGTGTTGAAACCGGAATTCTAAAACCTGGTATGGTCGTCACCTTTGCTCCATCTGGATTGACCACTGAAGTAAAGTCTGTAGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTAGGGTTCAACGTGAAGAATGTCGCCGTGAAGGATCTCAAGCGTGGCTACGTTGCCTCAAATTCCAAGGATGATCCCGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGCCAGATCGGAAATGGCTATGCCCCTGTTCTCGACTGCCACACCTCTCACATTGCTGTCAAATTTGCTGAGATCTTGACCAAGATCGACAGGCGATCTGATGATCCCCACCAAGCCCATGGTGGTGGAAACCTTCTCCGAGTACCCCCACTCGGGCGATTTGCCGTGAGAGACATGCGTCAAACTGTGGCCGTCGGTGTCATCAAGAGCGTCGAGAAGAAGGATCCAAGCGGTGCCAAGGTCACCAAGTCTGCTGCTAAGAAATCTGGTAAGTGA 1290 49.61 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSDDPHQAHGGGNLLRVPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSGK 429
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 511335 512803 + Lag0027409.1 Lac8g0022 615856
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0022 429 SUPERFAMILY Translation proteins 231 360 IPR009000 -
Lac8g0022 429 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g0022 429 CDD EF1_alpha 9 227 - -
Lac8g0022 429 PANTHER TRANSLATION FACTOR 4 373 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Lac8g0022 429 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
Lac8g0022 429 Gene3D - 1 228 IPR027417 -
Lac8g0022 429 FunFam Elongation factor 1-alpha 229 316 - -
Lac8g0022 429 CDD EF1_alpha_II 230 320 - -
Lac8g0022 429 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g0022 429 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g0022 429 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g0022 429 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g0022 429 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g0022 429 Pfam Elongation factor Tu GTP binding domain 6 223 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g0022 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Lac8g0022 429 Gene3D Translation factors 382 410 - -
Lac8g0022 429 Gene3D Translation factors 323 378 - -
Lac8g0022 429 Pfam Elongation factor Tu C-terminal domain 322 409 IPR004160 -
Lac8g0022 429 NCBIfam translation elongation factor EF-1 subunit alpha 1 373 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Lac8g0022 429 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lac8g0022 429 FunFam Elongation factor 1-alpha 1 226 - -
Lac8g0022 429 Gene3D Translation factors 229 316 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g0022 Lac-Chr8:511335 Lac9g2564 Lac-Chr9:44257201 2.60E-231 dispersed
Lac8g0022 Lac-Chr8:511335 Lac8g2435 Lac-Chr8:42411267 6.10E-233 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0022 K03231 - csv:105434427 812.372