Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g0022 | ATGGGTAAGGAGAAGGTTCACATTAACATTGTGGTCATTGGCCACGTCGACTCTGGCAAGTCGACCACCACTGGCCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCCTTCAAGTATGCCTGGGTGTTGGACAAGCTGAAGGCTGAACGTGAGCGTGGTATTACCATTGACATTGCCCTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTCATTGATGCTCCAGGTCATCGTGACTTCATCAAGAACATGATTACTGGTACTTCCCAAGCTGACTGTGCTGTTCTTATCATTGACTCAACTACCGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAGCATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACTCCCAAATACTCCAAGTCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACCAACCTCGACTGGTACAAGGGTCCAACCCTTCTTGAGGCACTCGACCAGGTCCACGAGCCCAAGAGACCATCTGACAAGCCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACCGTCCCAGTGGGTCGTGTTGAAACCGGAATTCTAAAACCTGGTATGGTCGTCACCTTTGCTCCATCTGGATTGACCACTGAAGTAAAGTCTGTAGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTAGGGTTCAACGTGAAGAATGTCGCCGTGAAGGATCTCAAGCGTGGCTACGTTGCCTCAAATTCCAAGGATGATCCCGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGCCAGATCGGAAATGGCTATGCCCCTGTTCTCGACTGCCACACCTCTCACATTGCTGTCAAATTTGCTGAGATCTTGACCAAGATCGACAGGCGATCTGATGATCCCCACCAAGCCCATGGTGGTGGAAACCTTCTCCGAGTACCCCCACTCGGGCGATTTGCCGTGAGAGACATGCGTCAAACTGTGGCCGTCGGTGTCATCAAGAGCGTCGAGAAGAAGGATCCAAGCGGTGCCAAGGTCACCAAGTCTGCTGCTAAGAAATCTGGTAAGTGA | 1290 | 49.61 | MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSDDPHQAHGGGNLLRVPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSGK | 429 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 511335 | 512803 | + | Lag0027409.1 | Lac8g0022 | 615856 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g0022 | 429 | SUPERFAMILY | Translation proteins | 231 | 360 | IPR009000 | - | |
| Lac8g0022 | 429 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 230 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac8g0022 | 429 | CDD | EF1_alpha | 9 | 227 | - | - | |
| Lac8g0022 | 429 | PANTHER | TRANSLATION FACTOR | 4 | 373 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
| Lac8g0022 | 429 | Pfam | Elongation factor Tu domain 2 | 248 | 313 | IPR004161 | GO:0005525(InterPro) | |
| Lac8g0022 | 429 | Gene3D | - | 1 | 228 | IPR027417 | - | |
| Lac8g0022 | 429 | FunFam | Elongation factor 1-alpha | 229 | 316 | - | - | |
| Lac8g0022 | 429 | CDD | EF1_alpha_II | 230 | 320 | - | - | |
| Lac8g0022 | 429 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac8g0022 | 429 | PRINTS | GTP-binding elongation factor signature | 148 | 157 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac8g0022 | 429 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac8g0022 | 429 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac8g0022 | 429 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac8g0022 | 429 | Pfam | Elongation factor Tu GTP binding domain | 6 | 223 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac8g0022 | 429 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 249 | IPR027417 | - | |
| Lac8g0022 | 429 | Gene3D | Translation factors | 382 | 410 | - | - | |
| Lac8g0022 | 429 | Gene3D | Translation factors | 323 | 378 | - | - | |
| Lac8g0022 | 429 | Pfam | Elongation factor Tu C-terminal domain | 322 | 409 | IPR004160 | - | |
| Lac8g0022 | 429 | NCBIfam | translation elongation factor EF-1 subunit alpha | 1 | 373 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
| Lac8g0022 | 429 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 61 | 76 | IPR031157 | - | |
| Lac8g0022 | 429 | FunFam | Elongation factor 1-alpha | 1 | 226 | - | - | |
| Lac8g0022 | 429 | Gene3D | Translation factors | 229 | 316 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac8g0022 | Lac-Chr8:511335 | Lac9g2564 | Lac-Chr9:44257201 | 2.60E-231 | dispersed | |
| Lac8g0022 | Lac-Chr8:511335 | Lac8g2435 | Lac-Chr8:42411267 | 6.10E-233 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g0022 | K03231 | - | csv:105434427 | 812.372 |