Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0047 ATGTCCATCCTGCCTTCCCAAATCCACGGTTCCACTTCAGCCTCTTCTTCTTCTTCTTCTTCACCTTCCTCTCTAAACCCTAATTCCCACCATGGACATGGACATGGACCCGACCCCTTCCTCTCTCACTCTCAACCCCCTCCCTCTTTCTCCCCTCTACGGATCTCCGATCCCGAATCTTCTCTCCGGGATTCCTGCACCGCTTCAGGTTCGTCGACTCAACCTGCAAATGCTGCTGAATCTTCCACGAAGGTAAGTGAATTAGAGACCCCAAATGATTTGAAGATGCCAGCTCGTCAAAACACTGAAACCCATTTGCAGTGCCAATCTGGCAAACAAGAGGGTGGATCAATCATGCCTGGGAGTAAAATATCATCTACTCTAATTTCTTCTCATGATCAACAAAGTGTTAGGTCTGCAAACTCTCATGGCAACAACAAACGCCCGGCTGGAAGAAAAGCCCAAATCACAAATGGAAACCATTTGCTTAATTTTCAATATGATCCTATTTCTCATCCTCGCCCTCGAGCCAGAGCTCCTCCTCCTAGAAGACCACATAAGATAAAGCCATACAACAAGGATCTCTTTCTCCAGGCTAATTACAAATTTGTGGTATTAGATTCAGGTTATCATACACCTGAATATTTGGATCCTGATAAAATGTTGCGTTGGGAGGATATCATATGTGTAAGGTATTCTACACCATCGTTGGTCCAATGTCCTATTTGTCTGGAACATCCACTCTGTCCTCAAATTACCTCATGTGGACATATTTATTGTTTCCCGTGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCATAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGTTGTCTCCAAAGGATTTATACACTGTCCACATTGAGCTTTTAAAGCAATATTCTGTCGGTGATGCTATAGACTTTATGCTTTTAACTCGGCAAAAAAATTCATTCACCATATCACTCAAGGATAAACAAGAGGATGATATCAGGTCAAGTGACAACGATGAAACCTATGATTCTTTTTCAAAGTTTATATTTACATCTGACGTGGATCTCTCAGTGCGGAAAGCAATATCTGATCTAGATGCCTGGTTAGCAAAAGCAGAAGCAGGGCAAGTAGATGACCTCGAAAAGCTTCCATATGTTTGTGCTGCTTTGGAACAACTGGAGCAGAGAAAGAAGTATTGGAATGAACATCAGGCTTGTTTTAAGCACAATGACTGTCAGATAGGATCTCATGTGCTCCTGCCAACTGATAGTGTTAGGAATGCTGGTCCTGGAGTGTGCAGTTCTGGACATGAGGCTTCTTCCATTGATAGTAATGATGGTTGTAAGTTTCCAGGAAATGTAGTGCAAGATAAGTTGGATTATTCTACTCCTGTGGGTCAGACTGAGGCTGTGGATGAATCTTTAGAACTCCAACAAAACTCAAACGAAATTAGAGATGCAAAGGACAAGGACTCATACAATTTTTTCCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAACATTATGGGAGCTACGATAGGCTTCCACTCAGAATAAGTGGAAAGATTTTAGAATTTGAAACGGTGACTCAGACTGAGGCCACAAGAAGGCGTTATCGTTACTTAAGTCATTTTTCTTTAACAACATCATTTCAGCTCTGTGAAATTGATTTGACCAACCTATTGCCTTCGTCCTCCATGATCCCCTTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAGAAAGATGCAAAGGGAGAAGGTCAAAGCAGAAGCTGCTTCAACGTGTTCTTTGTCAATGATGGCTAGTTCGGGAAGTTCCTATCATTATGATACTCCAAAGCTTTCCCTGGATGACTTTCAAGCTTTAGGAAGTTCTCCTGTGGCATCATCTAGCCCTCCTGTTGGGGGGAGGCAACTGTTCTCAAGCGTTACAAGACTTGGTTTCGCAGCCGCACACGATTCTCCATCCTTGAGAGTTGAGGAAACTGATTCACTGCACGTTAATGAAGTGAGAAGTGATTTATCTGGTGCAAATGACATACATAACGCAAGCCCGTCATTCGCAAACGTAATATCGAGAGCGAAGTCTGGAGGAAGTACAGAATCTCCAAAGGCAAATGAAGTGGGAAAGAAGGGAAAGAAACCAAGTCGAGTTCTGTTATCTACAGCGGGCGGTCGACGCTATTGA 2241 43.02 MSILPSQIHGSTSASSSSSSSPSSLNPNSHHGHGHGPDPFLSHSQPPPSFSPLRISDPESSLRDSCTASGSSTQPANAAESSTKVSELETPNDLKMPARQNTETHLQCQSGKQEGGSIMPGSKISSTLISSHDQQSVRSANSHGNNKRPAGRKAQITNGNHLLNFQYDPISHPRPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDSGYHTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPLCPQITSCGHIYCFPCILRYLLMGKEDHKGDCWKKCPLCFVMLSPKDLYTVHIELLKQYSVGDAIDFMLLTRQKNSFTISLKDKQEDDIRSSDNDETYDSFSKFIFTSDVDLSVRKAISDLDAWLAKAEAGQVDDLEKLPYVCAALEQLEQRKKYWNEHQACFKHNDCQIGSHVLLPTDSVRNAGPGVCSSGHEASSIDSNDGCKFPGNVVQDKLDYSTPVGQTEAVDESLELQQNSNEIRDAKDKDSYNFFQATDGQHIILHPLNMKCLLQHYGSYDRLPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSSSMIPFMDEIKKREKQRKQLARKMQREKVKAEAASTCSLSMMASSGSSYHYDTPKLSLDDFQALGSSPVASSSPPVGGRQLFSSVTRLGFAAAHDSPSLRVEETDSLHVNEVRSDLSGANDIHNASPSFANVISRAKSGGSTESPKANEVGKKGKKPSRVLLSTAGGRRY 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 818308 823614 + Lag0027434.1 Lac8g0047 615881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0047 746 ProSitePatterns Zinc finger RING-type signature. 255 264 IPR017907 -
Lac8g0047 746 CDD RING-HC_RNF10 238 295 - -
Lac8g0047 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 336 IPR013083 -
Lac8g0047 746 MobiDBLite consensus disorder prediction 47 165 - -
Lac8g0047 746 ProSiteProfiles Zinc finger RING-type profile. 240 286 IPR001841 -
Lac8g0047 746 MobiDBLite consensus disorder prediction 1 184 - -
Lac8g0047 746 Pfam Zinc finger, C3HC4 type (RING finger) 240 286 IPR018957 GO:0046872(InterPro)
Lac8g0047 746 MobiDBLite consensus disorder prediction 711 746 - -
Lac8g0047 746 FunFam RING finger protein 10 233 301 - -
Lac8g0047 746 SMART ring_2 240 286 IPR001841 -
Lac8g0047 746 SUPERFAMILY RING/U-box 235 300 - -
Lac8g0047 746 PANTHER RING FINGER 10 FAMILY MEMBER 72 746 IPR039739 GO:0000976(PANTHER)|GO:0045944(PANTHER)
Lac8g0047 746 Coils Coil 583 606 - -
Lac8g0047 746 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g0047 Lac-Chr8:818308 Lac2g1276 Lac-Chr2:10544530 5.60E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0047 K26979 - csv:101203987 1214.91