Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g0052 | ATGCTTCCCAAATCCACCGGAATCCTCTGGCTCGACGCCGACCACGACGACGCCGCTTCTTGGACTAGAACCACCAACGACCACGACCACGACCACGACGTCGCCATTGCCGCCTCCATTTCCTCCTTCAAATCCATGCTCGAATCCGACTGGTACATCAACTCTACCACTCCTCTCAATCCCTCTCACCATGATTTCCATTGCCCAGATGCCTTCTCCTCCAATCCCACCGATAACTTCCTCCTTCACCCCATCGATTCCTCCTCCTCCTGCTCTCCCTCCCACGCTTTTCCTCTCGATCCTTCCCATTCCCACTCTATCTTGCCTTCTCATAAATCCTGTTTCTCTTCTCTTCTCAATGTCGTTTGCGGCAGTACTTTTGATAATGGCTTCGATTTGGGCGGCGACACTGGCCTGCTTGGATCTTACCAGGGGAACCAACCTTCCAATTCCTCCCTGTTGATGGGATTCGCCGGCATTTCGTCTCTTCCTCAAATCGCTAATCAGGAACTTGGCTTGAACCACTCCGACTTTCCGGCGACTCGGTTGCTTCCGGTCGCCGATAACCCTCCCGCACTCGGCGCTGGATTTAATCCACCGGCGGCCTTCGAGAGCTTCGATGGCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTCCCGCAGGTCGGCGCGCAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGAGCTGATAAACTGGAGAATTTGGAGGTTTCGGGTTTGAAATTAGGAGAAGGCTCAATGTGGACGGCGAATTTAGAGAAGCTGAGGAACAAGAACGCCGACGAGGAAATTGAAGACGGCAGCGTGGATGTTTCTCGCTTGAATTACGATTCCGACGAAGCCAATGAATATAATAAGCAAGAGGACAATGCTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACCGTAACCGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAGAATCTCATGGCGGAGCGGCGGCGGAGAAAGAAGCTGAACGACAGACTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATACTTGGAGATGCCATTGATTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTTCATAATGAACTTGAGTCAACTCCTCCTGGTTCAATGTTGCAGCCTTCTGCAAGCTTCCACCCTTTGACGCCAACGCTGCCGACTCTTCCCTGTCGTGTCAAAGAAGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAAAACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTATTGCTATCCACCATGAGGGCTCTGGATAACCTCGGCTTGGATATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCCTTGGATGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTACCTGAGCAAATAAAGGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTATTTAA | 1590 | 51.45 | MLPKSTGILWLDADHDDAASWTRTTNDHDHDHDVAIAASISSFKSMLESDWYINSTTPLNPSHHDFHCPDAFSSNPTDNFLLHPIDSSSSCSPSHAFPLDPSHSHSILPSHKSCFSSLLNVVCGSTFDNGFDLGGDTGLLGSYQGNQPSNSSLLMGFAGISSLPQIANQELGLNHSDFPATRLLPVADNPPALGAGFNPPAAFESFDGCGNALFQNRSKVLRPLEVFPQVGAQPTLFQKRAAHRVGSAGADKLENLEVSGLKLGEGSMWTANLEKLRNKNADEEIEDGSVDVSRLNYDSDEANEYNKQEDNANAKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSMLQPSASFHPLTPTLPTLPCRVKEELCPSSLSSPKTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGVI | 529 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 843746 | 846674 | - | Lag0027439.1 | Lac8g0052 | 615886 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g0052 | 529 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 338 | 387 | IPR011598 | GO:0046983(InterPro) | |
Lac8g0052 | 529 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 293 | 524 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Lac8g0052 | 529 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 341 | 408 | IPR036638 | GO:0046983(InterPro) | |
Lac8g0052 | 529 | CDD | bHLH_AtAMS_like | 341 | 406 | - | - | |
Lac8g0052 | 529 | Gene3D | - | 332 | 401 | IPR036638 | GO:0046983(InterPro) | |
Lac8g0052 | 529 | MobiDBLite | consensus disorder prediction | 309 | 331 | - | - | |
Lac8g0052 | 529 | CDD | ACT_UUR-ACR-like | 458 | 518 | - | - | |
Lac8g0052 | 529 | Pfam | Plant bHLH transcription factor, ACT-like domain | 446 | 519 | IPR054502 | - | |
Lac8g0052 | 529 | Coils | Coil | 381 | 401 | - | - | |
Lac8g0052 | 529 | ProSiteProfiles | ACT domain profile. | 457 | 529 | IPR002912 | - | |
Lac8g0052 | 529 | Pfam | Helix-loop-helix DNA-binding domain | 345 | 387 | IPR011598 | GO:0046983(InterPro) | |
Lac8g0052 | 529 | MobiDBLite | consensus disorder prediction | 308 | 342 | - | - | |
Lac8g0052 | 529 | SMART | finulus | 344 | 393 | IPR011598 | GO:0046983(InterPro) | |
Lac8g0052 | 529 | FunFam | BHLH transcription factor | 334 | 402 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0613 | Lac-Chr10:4711912 | Lac8g0052 | Lac-Chr8:843746 | 7.50E-135 | dispersed | |
Lac13g0199 | Lac-Chr13:1382576 | Lac8g0052 | Lac-Chr8:843746 | 8.40E-20 | dispersed | |
Lac1g2750 | Lac-Chr1:48689311 | Lac8g0052 | Lac-Chr8:843746 | 1.90E-32 | dispersed | |
Lac4g1294 | Lac-Chr4:30985873 | Lac8g0052 | Lac-Chr8:843746 | 4.30E-17 | dispersed | |
Lac7g0130 | Lac-Chr7:1037659 | Lac8g0052 | Lac-Chr8:843746 | 1.30E-10 | dispersed | |
Lac8g0052 | Lac-Chr8:843746 | Lac9g2627 | Lac-Chr9:44764774 | 4.70E-09 | dispersed | |
Lac8g0052 | Lac-Chr8:843746 | Lac6g1040 | Lac-Chr6:9489029 | 1.10E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24236 | PF00010 | HLH | 2.20E-09 | No_clan | Lac | TF |
Pathway information
