Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0052 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTCGACGCCGACCACGACGACGCCGCTTCTTGGACTAGAACCACCAACGACCACGACCACGACCACGACGTCGCCATTGCCGCCTCCATTTCCTCCTTCAAATCCATGCTCGAATCCGACTGGTACATCAACTCTACCACTCCTCTCAATCCCTCTCACCATGATTTCCATTGCCCAGATGCCTTCTCCTCCAATCCCACCGATAACTTCCTCCTTCACCCCATCGATTCCTCCTCCTCCTGCTCTCCCTCCCACGCTTTTCCTCTCGATCCTTCCCATTCCCACTCTATCTTGCCTTCTCATAAATCCTGTTTCTCTTCTCTTCTCAATGTCGTTTGCGGCAGTACTTTTGATAATGGCTTCGATTTGGGCGGCGACACTGGCCTGCTTGGATCTTACCAGGGGAACCAACCTTCCAATTCCTCCCTGTTGATGGGATTCGCCGGCATTTCGTCTCTTCCTCAAATCGCTAATCAGGAACTTGGCTTGAACCACTCCGACTTTCCGGCGACTCGGTTGCTTCCGGTCGCCGATAACCCTCCCGCACTCGGCGCTGGATTTAATCCACCGGCGGCCTTCGAGAGCTTCGATGGCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTCCCGCAGGTCGGCGCGCAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGAGCTGATAAACTGGAGAATTTGGAGGTTTCGGGTTTGAAATTAGGAGAAGGCTCAATGTGGACGGCGAATTTAGAGAAGCTGAGGAACAAGAACGCCGACGAGGAAATTGAAGACGGCAGCGTGGATGTTTCTCGCTTGAATTACGATTCCGACGAAGCCAATGAATATAATAAGCAAGAGGACAATGCTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACCGTAACCGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAGAATCTCATGGCGGAGCGGCGGCGGAGAAAGAAGCTGAACGACAGACTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATACTTGGAGATGCCATTGATTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTTCATAATGAACTTGAGTCAACTCCTCCTGGTTCAATGTTGCAGCCTTCTGCAAGCTTCCACCCTTTGACGCCAACGCTGCCGACTCTTCCCTGTCGTGTCAAAGAAGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAAAACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTATTGCTATCCACCATGAGGGCTCTGGATAACCTCGGCTTGGATATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCCTTGGATGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTACCTGAGCAAATAAAGGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTATTTAA 1590 51.45 MLPKSTGILWLDADHDDAASWTRTTNDHDHDHDVAIAASISSFKSMLESDWYINSTTPLNPSHHDFHCPDAFSSNPTDNFLLHPIDSSSSCSPSHAFPLDPSHSHSILPSHKSCFSSLLNVVCGSTFDNGFDLGGDTGLLGSYQGNQPSNSSLLMGFAGISSLPQIANQELGLNHSDFPATRLLPVADNPPALGAGFNPPAAFESFDGCGNALFQNRSKVLRPLEVFPQVGAQPTLFQKRAAHRVGSAGADKLENLEVSGLKLGEGSMWTANLEKLRNKNADEEIEDGSVDVSRLNYDSDEANEYNKQEDNANAKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSMLQPSASFHPLTPTLPTLPCRVKEELCPSSLSSPKTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGVI 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 843746 846674 - Lag0027439.1 Lac8g0052 615886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0052 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983(InterPro)
Lac8g0052 529 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 293 524 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac8g0052 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 408 IPR036638 GO:0046983(InterPro)
Lac8g0052 529 CDD bHLH_AtAMS_like 341 406 - -
Lac8g0052 529 Gene3D - 332 401 IPR036638 GO:0046983(InterPro)
Lac8g0052 529 MobiDBLite consensus disorder prediction 309 331 - -
Lac8g0052 529 CDD ACT_UUR-ACR-like 458 518 - -
Lac8g0052 529 Pfam Plant bHLH transcription factor, ACT-like domain 446 519 IPR054502 -
Lac8g0052 529 Coils Coil 381 401 - -
Lac8g0052 529 ProSiteProfiles ACT domain profile. 457 529 IPR002912 -
Lac8g0052 529 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983(InterPro)
Lac8g0052 529 MobiDBLite consensus disorder prediction 308 342 - -
Lac8g0052 529 SMART finulus 344 393 IPR011598 GO:0046983(InterPro)
Lac8g0052 529 FunFam BHLH transcription factor 334 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0613 Lac-Chr10:4711912 Lac8g0052 Lac-Chr8:843746 7.50E-135 dispersed
Lac13g0199 Lac-Chr13:1382576 Lac8g0052 Lac-Chr8:843746 8.40E-20 dispersed
Lac1g2750 Lac-Chr1:48689311 Lac8g0052 Lac-Chr8:843746 1.90E-32 dispersed
Lac4g1294 Lac-Chr4:30985873 Lac8g0052 Lac-Chr8:843746 4.30E-17 dispersed
Lac7g0130 Lac-Chr7:1037659 Lac8g0052 Lac-Chr8:843746 1.30E-10 dispersed
Lac8g0052 Lac-Chr8:843746 Lac9g2627 Lac-Chr9:44764774 4.70E-09 dispersed
Lac8g0052 Lac-Chr8:843746 Lac6g1040 Lac-Chr6:9489029 1.10E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24236 PF00010 HLH 2.20E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0052 - - - 0.0