Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g0070 | ATGAATGACGCAGATGTTTCCAAGCAGATCCAGCAGATGGTGAGGTTCATCCGCCAGGAAGCGGAGGAAAAGGCCAACGAGATCTCCGTCTCCGCTGAAGAAGAATTCAATATTGAAAAGCTGCAGCTGGTTGAGGCAGAGAAGAAGAAGATCAGGCAAGAGTACGAGAAGAAGGAGAAGCAAGTTGAAATTCGGAAGAAGATTGAGTACTCCATGCAGCTCAATGCTTCTCGGATCAAAGTTCTGCAAGCACAGGATGATGTAGTGAACTCTATGAAAGAGGCAGCTTCAAAGGAACTTCTGAATGTAAGCCAAATTGAACATGTCTACAAGAATCTTTTGAAGGATCTCATTGTTCAGAGCTTGCTTCGACTGAAAGAGCCAGCTGTTTTATTGCGATGCCGCAAAGGTGACGTCCATTTGGTGGAGTCTGTGCTGGGTTCAGCAGCAGTTGAATATGCAGAGAAAGCAAAAGTTCACGAGCCAGAGATCATTATTGACCATGTCCATCTTCCACCTGGTCCAAGCCATCACCATCATCACGATCCTTTTTGCTCTGGAGGTGTAGTATTGGCATCTCGAGATGGGAAGATCGTCTGTGAGAACACCCTTGATGCTAGGTTGGATGTTGTGTTCCGTAAAAAACTTCCAGAGCTCCACGGGGAGGTAGGTGCCCCTATCGACTCGATAGTATTTCTGGTGATTTTGGACCACTCCGGTGTACAAGGAGCTGATGAGGACAACTTGGCGAAAATAGGACTGGGAGATGGACCCCAGAGGCGAAACCGGCAAGGGGAACGGGCCAAGACCGAAGGGGTCGGGCTTAAGCCCGACCCCATGCTCGGCCCGCTTGCGCGGGCCGAGTTCTTCCTGCTCCGTTCGACCCCTACCGCCTCTGGCCGCCCTGGTTCCGCATGGGATCTCGAACCCGAACTCTCTACTCTCTCCTCTTACTCTCTAGCTCTCATCCTTCCGTTTTCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCCTTGATTTGCAGGCCACGTCTTCCCCTCATCTACAAATTTACTGTTGGTGGCACGTGA | 1092 | 50.64 | MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNSMKEAASKELLNVSQIEHVYKNLLKDLIVQSLLRLKEPAVLLRCRKGDVHLVESVLGSAAVEYAEKAKVHEPEIIIDHVHLPPGPSHHHHHDPFCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPELHGEVGAPIDSIVFLVILDHSGVQGADEDNLAKIGLGDGPQRRNRQGERAKTEGVGLKPDPMLGPLARAEFFLLRSTPTASGRPGSAWDLEPELSTLSSYSLALILPFSDLSIGGGVASTTPVCRFSLICRPRLPLIYKFTVGGT | 363 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1028665 | 1033820 | + | Lag0027457.1 | Lac8g0070 | 615904 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g0070 | 363 | Gene3D | - | 1 | 62 | - | - | |
| Lac8g0070 | 363 | Gene3D | - | 92 | 224 | IPR038495 | - | |
| Lac8g0070 | 363 | SUPERFAMILY | V-type ATPase subunit E-like | 87 | 220 | - | - | |
| Lac8g0070 | 363 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 221 | IPR002842 | GO:0033178(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac8g0070 | 363 | Hamap | V-type proton ATPase subunit E [atpE]. | 8 | 225 | IPR002842 | GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac8g0070 | 363 | Coils | Coil | 38 | 61 | - | - | |
| Lac8g0070 | 363 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 220 | IPR002842 | GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac8g0070 | 363 | MobiDBLite | consensus disorder prediction | 250 | 277 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g2209 | Lac-Chr4:41762059 | Lac8g0070 | Lac-Chr8:1028665 | 2.20E-16 | dispersed | |
| Lac8g0070 | Lac-Chr8:1028665 | Lac11g2028 | Lac-Chr11:35921469 | 3.70E-29 | dispersed | |
| Lac9g1191 | Lac-Chr9:27756284 | Lac8g0070 | Lac-Chr8:1028665 | 1.20E-06 | dispersed | |
| Lac8g0070 | Lac-Chr8:1028665 | Lac6g2576 | Lac-Chr6:43465293 | 4.40E-30 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g0070 | K02150 | - | csv:101217221 | 374.4 |