Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0084 ATGGATCCTAAAACCTCATCAACAACAAAGCAGCCCCAAGAAGTGGTGCCCAACTTTTTGAACCTCCCTCTAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCAATCATGGGTGAGAACAAACCAGCTGAAATCAAGGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGAAAGAAACAGTTAGCTCCAAAGAGAAGCTCCAACAAAGATCGTCACACCAAAGTGGAAGGGCGAGGGCGAAGAATCCGTATGCCGGCTCTATGTGCGGCGAGGATTTTTCAATTGACGAGGGAATTGGGTCATAAATCCGACGGAGAGACCATCCAGTGGCTGCTGCAGCAGGCGGAGCCGTCGATAATCGCCGCCACAGGCACTGGAACCATCCCGGCTTCGGCTCTAGCTGCGGCGGCGGGCTCTGTTTCGCAACAGGGTGCTTCTCTCTCGGCCGGATTGCACCAAAAATTGGAGGAATTGGGAGGTGGCGGGTCCAGTAGGGCCAATTGGGGCAATTTGGGGCGACCCCATTTGGCCGCCACAGCCACAGGGCTTTGGCCCTCATCTGTCAGTGGCTTTGGCTTTCAGTCCTCAACTGCTGCTGCTGCTGCTGCTGCTCAATCAGCTGCTAATTTAGCTAATGAAACTTCAAATTACTTTCACAAACTTGGCTTCCCACCCTTTGACTTACCCCCTTCCAACATGAGTCCTATGAGTTTCACCTCCATTTTAGGTGGAAACACTCAACAGTTACCTGGTTTAGAGCTTGGATTGTCCCAACAAGATGGCCATATTGGGGTTATAAATCCTCAAGCATTGAACCAGATTTACCAACAGATGGGACAGGCTAGAGTTCATCAGCATCATCATCATCATCAACAGCATCAGCATCAGCAACCTCCTGCCAAGGATGATTCTCAAGATTCAGGGTGTGATTGTATACAACTGAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTTCTGTTTGTTTCTCTATTCAAAAGTTGGACTGCCGGGCTTATCATGTTGTAAGATCAGAATCTCTGCAAAATGAGCCGAGGTCGGAGTTTCTCCATGAATGTCGCCTTCAGTTTTCTCAAGGAAGAAGGAAAGAGCAAAGACTTATTGTTGCCTTTTTCTTAGGAGTTGAAAATAGTTTCAAGTCTGATGTTTCTAATCATTCTATGAGACTGAGCAGGAAAAGGCCAGAATGGGGACTGAGTGTCCTTTTTGTTGCCATAGGCACAGCACAGCACTTTGCTGTTTGA 1278 47.18 MDPKTSSTTKQPQEVVPNFLNLPLEQEEEEEEEEEEEESIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATATGLWPSSVSGFGFQSSTAAAAAAAQSAANLANETSNYFHKLGFPPFDLPPSNMSPMSFTSILGGNTQQLPGLELGLSQQDGHIGVINPQALNQIYQQMGQARVHQHHHHHQQHQHQQPPAKDDSQDSGCDCIQLRAAWLELNFIFSVCFSIQKLDCRAYHVVRSESLQNEPRSEFLHECRLQFSQGRRKEQRLIVAFFLGVENSFKSDVSNHSMRLSRKRPEWGLSVLFVAIGTAQHFAV 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1165814 1168478 - Lag0027471.1 Lac8g0084 615918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0084 425 Coils Coil 24 44 - -
Lac8g0084 425 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 63 324 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac8g0084 425 MobiDBLite consensus disorder prediction 283 311 - -
Lac8g0084 425 MobiDBLite consensus disorder prediction 24 41 - -
Lac8g0084 425 MobiDBLite consensus disorder prediction 1 16 - -
Lac8g0084 425 MobiDBLite consensus disorder prediction 52 83 - -
Lac8g0084 425 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Lac8g0084 425 MobiDBLite consensus disorder prediction 1 83 - -
Lac8g0084 425 Pfam TCP family transcription factor 72 262 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0309 Lac-Chr13:2216427 Lac8g0084 Lac-Chr8:1165814 3.80E-29 dispersed
Lac1g2157 Lac-Chr1:42952825 Lac8g0084 Lac-Chr8:1165814 1.90E-26 dispersed
Lac5g2885 Lac-Chr5:47098031 Lac8g0084 Lac-Chr8:1165814 1.40E-25 dispersed
Lac8g0084 Lac-Chr8:1165814 Lac8g2023 Lac-Chr8:38700712 1.50E-26 dispersed
Lac4g2142 Lac-Chr4:41057897 Lac8g0084 Lac-Chr8:1165814 2.00E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24239 PF03634 TCP 1.50E-30 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0084 - - - 0.0