Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0084 ATGGATCCTAAAACCTCATCAACAACAAAGCAGCCCCAAGAAGTGGTGCCCAACTTTTTGAACCTCCCTCTAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCAATCATGGGTGAGAACAAACCAGCTGAAATCAAGGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGAAAGAAACAGTTAGCTCCAAAGAGAAGCTCCAACAAAGATCGTCACACCAAAGTGGAAGGGCGAGGGCGAAGAATCCGTATGCCGGCTCTATGTGCGGCGAGGATTTTTCAATTGACGAGGGAATTGGGTCATAAATCCGACGGAGAGACCATCCAGTGGCTGCTGCAGCAGGCGGAGCCGTCGATAATCGCCGCCACAGGCACTGGAACCATCCCGGCTTCGGCTCTAGCTGCGGCGGCGGGCTCTGTTTCGCAACAGGGTGCTTCTCTCTCGGCCGGATTGCACCAAAAATTGGAGGAATTGGGAGGTGGCGGGTCCAGTAGGGCCAATTGGGGCAATTTGGGGCGACCCCATTTGGCCGCCACAGCCACAGGGCTTTGGCCCTCATCTGTCAGTGGCTTTGGCTTTCAGTCCTCAACTGCTGCTGCTGCTGCTGCTGCTCAATCAGCTGCTAATTTAGCTAATGAAACTTCAAATTACTTTCACAAACTTGGCTTCCCACCCTTTGACTTACCCCCTTCCAACATGAGTCCTATGAGTTTCACCTCCATTTTAGGTGGAAACACTCAACAGTTACCTGGTTTAGAGCTTGGATTGTCCCAACAAGATGGCCATATTGGGGTTATAAATCCTCAAGCATTGAACCAGATTTACCAACAGATGGGACAGGCTAGAGTTCATCAGCATCATCATCATCATCAACAGCATCAGCATCAGCAACCTCCTGCCAAGGATGATTCTCAAGATTCAGGGTGTGATTGTATACAACTGAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTTCTGTTTGTTTCTCTATTCAAAAGTTGGACTGCCGGGCTTATCATGTTGTAAGATCAGAATCTCTGCAAAATGAGCCGAGGTCGGAGTTTCTCCATGAATGTCGCCTTCAGTTTTCTCAAGGAAGAAGGAAAGAGCAAAGACTTATTGTTGCCTTTTTCTTAGGAGTTGAAAATAGTTTCAAGTCTGATGTTTCTAATCATTCTATGAGACTGAGCAGGAAAAGGCCAGAATGGGGACTGAGTGTCCTTTTTGTTGCCATAGGCACAGCACAGCACTTTGCTGTTTGA 1278 47.18 MDPKTSSTTKQPQEVVPNFLNLPLEQEEEEEEEEEEEESIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATATGLWPSSVSGFGFQSSTAAAAAAAQSAANLANETSNYFHKLGFPPFDLPPSNMSPMSFTSILGGNTQQLPGLELGLSQQDGHIGVINPQALNQIYQQMGQARVHQHHHHHQQHQHQQPPAKDDSQDSGCDCIQLRAAWLELNFIFSVCFSIQKLDCRAYHVVRSESLQNEPRSEFLHECRLQFSQGRRKEQRLIVAFFLGVENSFKSDVSNHSMRLSRKRPEWGLSVLFVAIGTAQHFAV 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1165814 1168478 - Lag0027471.1 Lac8g0084 615918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0084 425 Coils Coil 24 44 - -
Lac8g0084 425 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 63 324 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac8g0084 425 MobiDBLite consensus disorder prediction 283 311 - -
Lac8g0084 425 MobiDBLite consensus disorder prediction 24 41 - -
Lac8g0084 425 MobiDBLite consensus disorder prediction 1 16 - -
Lac8g0084 425 MobiDBLite consensus disorder prediction 52 83 - -
Lac8g0084 425 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Lac8g0084 425 MobiDBLite consensus disorder prediction 1 83 - -
Lac8g0084 425 Pfam TCP family transcription factor 72 262 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0084 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0309 Lac-Chr13:2216427 Lac8g0084 Lac-Chr8:1165814 3.80E-29 dispersed
Lac1g2157 Lac-Chr1:42952825 Lac8g0084 Lac-Chr8:1165814 1.90E-26 dispersed
Lac5g2885 Lac-Chr5:47098031 Lac8g0084 Lac-Chr8:1165814 1.40E-25 dispersed
Lac8g0084 Lac-Chr8:1165814 Lac8g2023 Lac-Chr8:38700712 1.50E-26 dispersed
Lac4g2142 Lac-Chr4:41057897 Lac8g0084 Lac-Chr8:1165814 2.00E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2023 . 40 264 TCP Transcription Factor Family AT5G23280 62.5 3.8e-65 245.7
Lac13g0918 . 36 260 TCP Transcription Factor Family AT5G23280 58.5 6.9e-59 224.9
Lac10g2715 . 40 210 TCP Transcription Factor Family AT5G23280 65.5 3.1e-51 199.5
Lac8g2693 . 40 210 TCP Transcription Factor Family AT5G23280 66.1 9.0e-51 198.0
Lac12g1849 . 53 342 TCP Transcription Factor Family AT2G45680 54.1 3.2e-70 263.1
Lac13g0309 . 67 167 TCP Transcription Factor Family AT3G47620 88.3 2.3e-42 171.0
Lac13g0026 . 155 237 TCP Transcription Factor Family AT3G47620 90.4 1.9e-36 151.4
Lac10g0060 . 59 160 TCP Transcription Factor Family AT3G47620 72.5 4.2e-36 150.2
Lac8g0084 . 1 313 TCP Transcription Factor Family AT3G27010 56.9 5.4e-61 232.3
Lac4g2142 . 26 251 TCP Transcription Factor Family AT3G27010 53.7 9.9e-55 211.5
Lac8g2023 . 1 263 TCP Transcription Factor Family AT5G08330 58.4 3.8e-67 252.3
Lac13g0918 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 3.5e-60 229.2
Lac10g2715 . 1 214 TCP Transcription Factor Family AT5G08330 56.4 1.2e-52 204.1
Lac8g2693 . 1 214 TCP Transcription Factor Family AT5G08330 58.9 4.6e-52 202.2
Lac4g0252 . 33 149 TCP Transcription Factor Family AT3G02150 66.1 2.8e-37 153.7
Lac12g0797 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 5.1e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24239 PF03634 TCP 1.50E-30 No_clan Lac TF