Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0090 ATGTTTTTTCCTTGCTCCGGCGGCGGCGGGTTGTCGGCGGCTTACCATCACGCCGACATGTCGTCCGGCGGCGGGTCTGATATGTTCGGGAGTTTTCACGGCGGCGATCTGCAGGGAAGTGGGTTTTTGGGGCTGAAGAGGGAGGTGGTGGATGCGGCGGCGGTGGAGGGCGGCGATCAGTACCAGATCGGCGGCGGCGGCGGGAAGAAGAAGGGGGAGAAGAAGGTGAGGAAACCGAGATATGCTTTTCAGACAAGGAGCCAAGTTGACATTCTTGACGATGGTTATCGTTGGAGGAAATATGGTCAAAAAGCTGTCAAGAACAACAAATTTCCTAGGAGCTATTATAGGTGCACACATCAAGGGTGCAATGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGGGTAGTGGTGACAACATATGAAGGCATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAAATTTACAGTACTCCTTTTTGA 519 50.87 MFFPCSGGGGLSAAYHHADMSSGGGSDMFGSFHGGDLQGSGFLGLKREVVDAAAVEGGDQYQIGGGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1267928 1269791 + Lag0027477.1 Lac8g0090 615924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0090 172 FunFam WRKY transcription factor 57 78 152 - -
Lac8g0090 172 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 70 152 IPR044810 GO:0003700(InterPro)
Lac8g0090 172 Gene3D WRKY domain 76 152 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g0090 172 ProSiteProfiles WRKY domain profile. 87 152 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g0090 172 SMART WRKY_cls 92 151 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g0090 172 SUPERFAMILY WRKY DNA-binding domain 84 151 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g0090 172 Pfam WRKY DNA -binding domain 93 149 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g3014 Lac-Chr5:48057168 Lac8g0090 Lac-Chr8:1267928 6.20E-13 dispersed
Lac7g0034 Lac-Chr7:284013 Lac8g0090 Lac-Chr8:1267928 3.20E-28 dispersed
Lac8g0090 Lac-Chr8:1267928 Lac9g0429 Lac-Chr9:8038047 1.10E-28 dispersed
Lac7g1265 Lac-Chr7:11984076 Lac8g0090 Lac-Chr8:1267928 2.90E-45 transposed
Lac12g0876 Lac-Chr12:9081101 Lac8g0090 Lac-Chr8:1267928 2.10E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24240 PF03106 WRKY 3.40E-26 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0090 - - - 0.0