Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0205 ATGGGTTCTGGTAATGGGTTTTATTCAACTAGTGAGTTCAATTTGGATGCCAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCGAAGATTGGAGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAGTACAAAAATCAGATTGTGGCTATCAAAATGGTGGGTAAAGGAGATACCCCTGAGAGGATGGCCAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAATTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTGACTGAATTACTCACAGGTGGTACATTGCGCAAATACCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTAGCGATCGGGTTTGCGCTTGATATTGCTCGTGCAATGGAGTGTTTACACTCCCATGGAATCATTCACCGTGACCTTAAACCAGAGAACTTGATATTGACTGCAGACCATAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGATGGATGGCTCCAGAGCTCTATAGCACAGTCACTTTAAAACATGGAGATAAAAAGCATTACAATCATAAGGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAACAGGTTGCCGTTCGAAGGCATGTCGAATTTACAGGCGGCGTATGCAGCTGCTTTTAAGAACATGAGGCCTAGTGCTGAAAATCTTCCAGAGGACTTAGCTTTGATAGTGACATCGTGTTGGAGAGAGGATCCAAACACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTACAGTCCCTTGCTAGAATATCACCACGAGCACCTGTGATCCCGCCTCGGATATGTGCTTCTGAAAATGTCGTGATACCACCGGAATCTCCTGGTACAAATTCCTTGATGGCTGTCAGGCATGGCTCCGGGGAAGCCTCACATGGCATGATCGAAGAAACTCCGAAAAGCTCCTTTTTTTGCTTTAACAAGTGTTACTGA 1059 44.0 MGSGNGFYSTSEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKYLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLARISPRAPVIPPRICASENVVIPPESPGTNSLMAVRHGSGEASHGMIEETPKSSFFCFNKCY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2314970 2318217 - Lag0027592.1 Lac8g0205 616039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0205 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Lac8g0205 352 CDD STKc_MAP3K-like 32 286 - -
Lac8g0205 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Lac8g0205 352 SUPERFAMILY Protein kinase-like (PK-like) 17 308 IPR011009 -
Lac8g0205 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g0205 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g0205 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g0205 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g0205 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0205 352 Gene3D Transferase(Phosphotransferase) domain 1 106 296 - -
Lac8g0205 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g0205 352 SMART serkin_6 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0205 352 PANTHER SERINE-THREONINE PROTEIN KINASE 20 290 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac8g0205 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524(InterPro)
Lac8g0205 352 Pfam Protein tyrosine and serine/threonine kinase 30 286 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0141 Lac-Chr3:987103 Lac8g0205 Lac-Chr8:2314970 5.60E-158 dispersed
Lac6g2163 Lac-Chr6:37875367 Lac8g0205 Lac-Chr8:2314970 2.30E-40 dispersed
Lac8g0205 Lac-Chr8:2314970 Lac8g2560 Lac-Chr8:43304097 4.20E-155 dispersed
Lac8g0205 Lac-Chr8:2314970 Lac1g3332 Lac-Chr1:53046788 4.30E-59 transposed
Lac8g0205 Lac-Chr8:2314970 Lac10g0885 Lac-Chr10:7097697 4.30E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86351 PF07714 PK_Tyr_Ser-Thr 2.20E-57 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0205 - - - 0.0