Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g0205 | ATGGGTTCTGGTAATGGGTTTTATTCAACTAGTGAGTTCAATTTGGATGCCAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCGAAGATTGGAGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAGTACAAAAATCAGATTGTGGCTATCAAAATGGTGGGTAAAGGAGATACCCCTGAGAGGATGGCCAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAATTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTGACTGAATTACTCACAGGTGGTACATTGCGCAAATACCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTAGCGATCGGGTTTGCGCTTGATATTGCTCGTGCAATGGAGTGTTTACACTCCCATGGAATCATTCACCGTGACCTTAAACCAGAGAACTTGATATTGACTGCAGACCATAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGATGGATGGCTCCAGAGCTCTATAGCACAGTCACTTTAAAACATGGAGATAAAAAGCATTACAATCATAAGGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAACAGGTTGCCGTTCGAAGGCATGTCGAATTTACAGGCGGCGTATGCAGCTGCTTTTAAGAACATGAGGCCTAGTGCTGAAAATCTTCCAGAGGACTTAGCTTTGATAGTGACATCGTGTTGGAGAGAGGATCCAAACACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTACAGTCCCTTGCTAGAATATCACCACGAGCACCTGTGATCCCGCCTCGGATATGTGCTTCTGAAAATGTCGTGATACCACCGGAATCTCCTGGTACAAATTCCTTGATGGCTGTCAGGCATGGCTCCGGGGAAGCCTCACATGGCATGATCGAAGAAACTCCGAAAAGCTCCTTTTTTTGCTTTAACAAGTGTTACTGA | 1059 | 44.0 | MGSGNGFYSTSEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKYLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLARISPRAPVIPPRICASENVVIPPESPGTNSLMAVRHGSGEASHGMIEETPKSSFFCFNKCY | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2314970 | 2318217 | - | Lag0027592.1 | Lac8g0205 | 616039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g0205 | 352 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 105 | - | - | |
Lac8g0205 | 352 | CDD | STKc_MAP3K-like | 32 | 286 | - | - | |
Lac8g0205 | 352 | FunFam | Kinase suppressor of Ras 1 | 15 | 105 | - | - | |
Lac8g0205 | 352 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 308 | IPR011009 | - | |
Lac8g0205 | 352 | PRINTS | Tyrosine kinase catalytic domain signature | 140 | 158 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0205 | 352 | PRINTS | Tyrosine kinase catalytic domain signature | 102 | 115 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0205 | 352 | PRINTS | Tyrosine kinase catalytic domain signature | 214 | 236 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0205 | 352 | PRINTS | Tyrosine kinase catalytic domain signature | 257 | 279 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0205 | 352 | ProSiteProfiles | Protein kinase domain profile. | 26 | 290 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0205 | 352 | Gene3D | Transferase(Phosphotransferase) domain 1 | 106 | 296 | - | - | |
Lac8g0205 | 352 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 146 | 158 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0205 | 352 | SMART | serkin_6 | 26 | 290 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0205 | 352 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 20 | 290 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lac8g0205 | 352 | ProSitePatterns | Protein kinases ATP-binding region signature. | 32 | 57 | IPR017441 | GO:0005524(InterPro) | |
Lac8g0205 | 352 | Pfam | Protein tyrosine and serine/threonine kinase | 30 | 286 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0141 | Lac-Chr3:987103 | Lac8g0205 | Lac-Chr8:2314970 | 5.60E-158 | dispersed | |
Lac6g2163 | Lac-Chr6:37875367 | Lac8g0205 | Lac-Chr8:2314970 | 2.30E-40 | dispersed | |
Lac8g0205 | Lac-Chr8:2314970 | Lac8g2560 | Lac-Chr8:43304097 | 4.20E-155 | dispersed | |
Lac8g0205 | Lac-Chr8:2314970 | Lac1g3332 | Lac-Chr1:53046788 | 4.30E-59 | transposed | |
Lac8g0205 | Lac-Chr8:2314970 | Lac10g0885 | Lac-Chr10:7097697 | 4.30E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86351 | PF07714 | PK_Tyr_Ser-Thr | 2.20E-57 | CL0016 | Lac | PK |
Pathway information
