Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0213 ATGGAGCCACTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACCCGACATCTACATCGAGGATTCTCGATTCATCTTGCCACCCTTCTCCTAAACAATCAAGGGATGAAGCAACTTCTTCGACATCCTACACTACGTCTCAAAATTGTGCCAAGAAACCTGTTCGTCATCCAAATGGTTCTTCTGTAAGTAGTAAAAAACATCCTACCGATGTGAACCATGACGTGCAGCTTGAAGGTTTAACTGATGTGATAAAGCATACACACGTTTCCAATAAGGGGAAATCCGAGTTTGTAAAGCCGACGGATATTTCATATAAATCGACTGAAAATTCTTTTCAGAAGAAGGTTCCCTTGGAGGGAGGTGGAGCAAAACCCCTTGTGAAGCATATTATCGACGATTCTAAGGATTGTTGTTCAAGTGGCTCGGAAGAATCTGGAAATCAAGTATTCAACGCATCGAAAGGAGCTGGCACACAAATAAATGATCGAAAAAAGTCTCAGCCATCTGAAATATCTTGTCCAAGTCCTCAGAATAGCTTATATTCCACGACTTTATATGCAGAGGCCAAACAAAGTTTCTCAAATACAGAAGTCAGTGAATGTGCAAGCAGCATTGAAAAGTCTTGCGAAAGCGTCGACGTCACAAATTCCTATGATCTTGACAAGAGCAGGAAAACGAGTGTTTACCGAGGCAGCACTGGCAGTGATATCAGTGATGAGAGCAACTCAAGTAGTTTAAGCAATGCCATGTACAAACCCCATAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGATCTCATGATGGGATGCTAGGTCTGAATCATTTCAGGTTGTTGCGGAGACTGGGGTGTGGCGATATCGGTAGTGTATATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATGAAGGTTATGGATAAAGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACCGAGCGCGAGATATTGCAATCTCTGGATCATCCATTCCTGCCAACTTTGTATACACATTTTGAGACAGAAAAGTTCTCTTGTTTGGTAATGGAGTTCTGCCCCGGAGGCGACTTGCATGCGCTCAGGCAGAGACAACCCGGAAAATTTTTTCCAGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTATCTGCATATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTTTTAGTGAGAGACGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGTGCCGTCTCCCCGACCCTTGTAAAATCATCAAACTCGGGTTTAGAATCTAAAAGCTCTGGGTACTGTGTTCAGCCTGCTTGCATCGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACGCCCCGCTTCCTAAGCAGACACAGGAAAGAAAAGAAATCCAAACCAAAGAGTGAAGTGTATCATCAAGTGAGCCCTCTACCAGAGCTCATTGCTGAGCCCACGAGTGCGAGATCGATGTCCTTCGTTGGTACACATGAGTACCTGGCACCTGAAATCATAAAGGGTGAAGGCCATGGCAGTGCCGTGGATTGGTGGACGTTCGGGATCTTTCTCTACGAACTTTTGTTTGGTAGAACTCCATTCAAGGGGGCTGGGAACCGGGCTACTTTGTTTAATGTGGTTGGCCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGAGACTTGATCAGAGGTTTGCTTGTAAAAGAACCACAACATCGTCTCGCTTATAGGCGTGGCGCTACCGAGATCAAGCAACATCCATTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGCGCCAATCCTCCAGAGGTGCCAAGAGTAGATGCCATTGATTTCTCTTCAAGAATGGAGACACCACACGCACCGACAGGCGAAAAGATGCCGGGAGTCGATGTGAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA 2022 44.96 MEPLVDGMSSLLKTQNPTSTSRILDSSCHPSPKQSRDEATSSTSYTTSQNCAKKPVRHPNGSSVSSKKHPTDVNHDVQLEGLTDVIKHTHVSNKGKSEFVKPTDISYKSTENSFQKKVPLEGGGAKPLVKHIIDDSKDCCSSGSEESGNQVFNASKGAGTQINDRKKSQPSEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSCESVDVTNSYDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLESKSSGYCVQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDAIDFSSRMETPHAPTGEKMPGVDVKPSGNYLEIDFF 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2395477 2398109 - Lag0027600.1 Lac8g0213 616047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0213 673 FunFam Serine/threonine-protein kinase D6PK-like 279 364 - -
Lac8g0213 673 Gene3D Phosphorylase Kinase; domain 1 273 366 - -
Lac8g0213 673 MobiDBLite consensus disorder prediction 1 74 - -
Lac8g0213 673 MobiDBLite consensus disorder prediction 9 68 - -
Lac8g0213 673 ProSiteProfiles Protein kinase domain profile. 281 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0213 673 PANTHER FLIPPASE KINASE 1-RELATED 142 639 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac8g0213 673 Gene3D Transferase(Phosphotransferase) domain 1 367 634 - -
Lac8g0213 673 Pfam Protein kinase domain 282 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0213 673 Pfam Protein kinase domain 514 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0213 673 FunFam serine/threonine-protein kinase D6PK-like 512 635 - -
Lac8g0213 673 SUPERFAMILY Protein kinase-like (PK-like) 256 644 IPR011009 -
Lac8g0213 673 MobiDBLite consensus disorder prediction 229 253 - -
Lac8g0213 673 MobiDBLite consensus disorder prediction 142 179 - -
Lac8g0213 673 CDD STKc_phototropin_like 280 640 - -
Lac8g0213 673 SMART serkin_6 281 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0213 673 MobiDBLite consensus disorder prediction 139 179 - -
Lac8g0213 673 FunFam serine/threonine-protein kinase D6PK-like 365 432 - -
Lac8g0213 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1598 Lac-Chr10:16863774 Lac8g0213 Lac-Chr8:2395477 5.40E-168 dispersed
Lac1g0981 Lac-Chr1:25756996 Lac8g0213 Lac-Chr8:2395477 2.40E-150 dispersed
Lac6g2951 Lac-Chr6:47118528 Lac8g0213 Lac-Chr8:2395477 4.00E-111 dispersed
Lac7g0042 Lac-Chr7:399941 Lac8g0213 Lac-Chr8:2395477 5.20E-107 dispersed
Lac7g0043 Lac-Chr7:403166 Lac8g0213 Lac-Chr8:2395477 9.60E-67 dispersed
Lac8g0213 Lac-Chr8:2395477 Lac9g2687 Lac-Chr9:45166135 2.70E-142 dispersed
Lac8g0213 Lac-Chr8:2395477 Lac1g3129 Lac-Chr1:51633641 1.00E-186 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86352 PF00069 Pkinase 8.60E-36 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0213 K08286 - csv:101219962 1248.8