Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g0213 | ATGGAGCCACTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACCCGACATCTACATCGAGGATTCTCGATTCATCTTGCCACCCTTCTCCTAAACAATCAAGGGATGAAGCAACTTCTTCGACATCCTACACTACGTCTCAAAATTGTGCCAAGAAACCTGTTCGTCATCCAAATGGTTCTTCTGTAAGTAGTAAAAAACATCCTACCGATGTGAACCATGACGTGCAGCTTGAAGGTTTAACTGATGTGATAAAGCATACACACGTTTCCAATAAGGGGAAATCCGAGTTTGTAAAGCCGACGGATATTTCATATAAATCGACTGAAAATTCTTTTCAGAAGAAGGTTCCCTTGGAGGGAGGTGGAGCAAAACCCCTTGTGAAGCATATTATCGACGATTCTAAGGATTGTTGTTCAAGTGGCTCGGAAGAATCTGGAAATCAAGTATTCAACGCATCGAAAGGAGCTGGCACACAAATAAATGATCGAAAAAAGTCTCAGCCATCTGAAATATCTTGTCCAAGTCCTCAGAATAGCTTATATTCCACGACTTTATATGCAGAGGCCAAACAAAGTTTCTCAAATACAGAAGTCAGTGAATGTGCAAGCAGCATTGAAAAGTCTTGCGAAAGCGTCGACGTCACAAATTCCTATGATCTTGACAAGAGCAGGAAAACGAGTGTTTACCGAGGCAGCACTGGCAGTGATATCAGTGATGAGAGCAACTCAAGTAGTTTAAGCAATGCCATGTACAAACCCCATAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGATCTCATGATGGGATGCTAGGTCTGAATCATTTCAGGTTGTTGCGGAGACTGGGGTGTGGCGATATCGGTAGTGTATATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATGAAGGTTATGGATAAAGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACCGAGCGCGAGATATTGCAATCTCTGGATCATCCATTCCTGCCAACTTTGTATACACATTTTGAGACAGAAAAGTTCTCTTGTTTGGTAATGGAGTTCTGCCCCGGAGGCGACTTGCATGCGCTCAGGCAGAGACAACCCGGAAAATTTTTTCCAGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTATCTGCATATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTTTTAGTGAGAGACGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGTGCCGTCTCCCCGACCCTTGTAAAATCATCAAACTCGGGTTTAGAATCTAAAAGCTCTGGGTACTGTGTTCAGCCTGCTTGCATCGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACGCCCCGCTTCCTAAGCAGACACAGGAAAGAAAAGAAATCCAAACCAAAGAGTGAAGTGTATCATCAAGTGAGCCCTCTACCAGAGCTCATTGCTGAGCCCACGAGTGCGAGATCGATGTCCTTCGTTGGTACACATGAGTACCTGGCACCTGAAATCATAAAGGGTGAAGGCCATGGCAGTGCCGTGGATTGGTGGACGTTCGGGATCTTTCTCTACGAACTTTTGTTTGGTAGAACTCCATTCAAGGGGGCTGGGAACCGGGCTACTTTGTTTAATGTGGTTGGCCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGAGACTTGATCAGAGGTTTGCTTGTAAAAGAACCACAACATCGTCTCGCTTATAGGCGTGGCGCTACCGAGATCAAGCAACATCCATTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGCGCCAATCCTCCAGAGGTGCCAAGAGTAGATGCCATTGATTTCTCTTCAAGAATGGAGACACCACACGCACCGACAGGCGAAAAGATGCCGGGAGTCGATGTGAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA | 2022 | 44.96 | MEPLVDGMSSLLKTQNPTSTSRILDSSCHPSPKQSRDEATSSTSYTTSQNCAKKPVRHPNGSSVSSKKHPTDVNHDVQLEGLTDVIKHTHVSNKGKSEFVKPTDISYKSTENSFQKKVPLEGGGAKPLVKHIIDDSKDCCSSGSEESGNQVFNASKGAGTQINDRKKSQPSEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSCESVDVTNSYDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLESKSSGYCVQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDAIDFSSRMETPHAPTGEKMPGVDVKPSGNYLEIDFF | 673 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2395477 | 2398109 | - | Lag0027600.1 | Lac8g0213 | 616047 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g0213 | 673 | FunFam | Serine/threonine-protein kinase D6PK-like | 279 | 364 | - | - | |
Lac8g0213 | 673 | Gene3D | Phosphorylase Kinase; domain 1 | 273 | 366 | - | - | |
Lac8g0213 | 673 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
Lac8g0213 | 673 | MobiDBLite | consensus disorder prediction | 9 | 68 | - | - | |
Lac8g0213 | 673 | ProSiteProfiles | Protein kinase domain profile. | 281 | 617 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0213 | 673 | PANTHER | FLIPPASE KINASE 1-RELATED | 142 | 639 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Lac8g0213 | 673 | Gene3D | Transferase(Phosphotransferase) domain 1 | 367 | 634 | - | - | |
Lac8g0213 | 673 | Pfam | Protein kinase domain | 282 | 431 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0213 | 673 | Pfam | Protein kinase domain | 514 | 617 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0213 | 673 | FunFam | serine/threonine-protein kinase D6PK-like | 512 | 635 | - | - | |
Lac8g0213 | 673 | SUPERFAMILY | Protein kinase-like (PK-like) | 256 | 644 | IPR011009 | - | |
Lac8g0213 | 673 | MobiDBLite | consensus disorder prediction | 229 | 253 | - | - | |
Lac8g0213 | 673 | MobiDBLite | consensus disorder prediction | 142 | 179 | - | - | |
Lac8g0213 | 673 | CDD | STKc_phototropin_like | 280 | 640 | - | - | |
Lac8g0213 | 673 | SMART | serkin_6 | 281 | 617 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0213 | 673 | MobiDBLite | consensus disorder prediction | 139 | 179 | - | - | |
Lac8g0213 | 673 | FunFam | serine/threonine-protein kinase D6PK-like | 365 | 432 | - | - | |
Lac8g0213 | 673 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 402 | 414 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g1598 | Lac-Chr10:16863774 | Lac8g0213 | Lac-Chr8:2395477 | 5.40E-168 | dispersed | |
Lac1g0981 | Lac-Chr1:25756996 | Lac8g0213 | Lac-Chr8:2395477 | 2.40E-150 | dispersed | |
Lac6g2951 | Lac-Chr6:47118528 | Lac8g0213 | Lac-Chr8:2395477 | 4.00E-111 | dispersed | |
Lac7g0042 | Lac-Chr7:399941 | Lac8g0213 | Lac-Chr8:2395477 | 5.20E-107 | dispersed | |
Lac7g0043 | Lac-Chr7:403166 | Lac8g0213 | Lac-Chr8:2395477 | 9.60E-67 | dispersed | |
Lac8g0213 | Lac-Chr8:2395477 | Lac9g2687 | Lac-Chr9:45166135 | 2.70E-142 | dispersed | |
Lac8g0213 | Lac-Chr8:2395477 | Lac1g3129 | Lac-Chr1:51633641 | 1.00E-186 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86352 | PF00069 | Pkinase | 8.60E-36 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g0213 | K08286 | - | csv:101219962 | 1248.8 |