Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g0237 | ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCGATGGATTCCCCTGTGGACCCTTCCGATTCCTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGGTCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAGTGCACATCTTGGCTCGCTGATGATTTGGGGAGTAGTGAGAGGACATACCGTTGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGCGGCGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCTTTGAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGTGAAGCCCCCTGTTCTGAGGGTCTCGTGGAGTTTCATGGAGCATTTTATACCCCTGACTCTGGGCAAATAAGCATAGCTTTGGAGTACATGGATGGAGGATCATTGGCCGATGTCCTGCGTTTGAAGAAATGTATACCTGAGCCTGTTCTTTCGTCTATGTTTCAGAAACTTCTTCATGGTCTAAGTTATCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTGCTTGTAAATCTCAAGGGTGAAGCAAAAATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCGGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATACTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCATCTCCATCACCGTCAAAACAGAAGTTTTCACCGGAGTTTTGCTCGTTTGTTGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAAAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTTTATACCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGACATTCGAAGTACATTAGCGGGAGACTGGCCTCTTGAAAAATTAGTTCATGTCGTCGAAAAACTCCAATGCCGAGCTCACGGTCAAGATGGAGTTGCCATAAGGGTGTCGGGATCTTTCATCATCGGGAACCAGTTCCTTATATGTGGAGACGGTGTACAAGTCGAGGGATTGCCAAATTTTAAGGATCTTGCCATTGATGTGGCGAGTAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATAGAACCGAGCAACCTCATCGGTCGCTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG | 1557 | 43.42 | MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDLGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDEFWHHTKALYHESSTLSFSGKQFSGPNDIFAKLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGQDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLAIDVASKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ | 518 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2622693 | 2627206 | - | Lag0027624.1 | Lac8g0237 | 616071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g0237 | 518 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 65 | 372 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Lac8g0237 | 518 | FunFam | mitogen-activated protein kinase kinase 3 | 165 | 361 | - | - | |
Lac8g0237 | 518 | FunFam | Mitogen-activated protein kinase kinase 3 | 363 | 517 | - | - | |
Lac8g0237 | 518 | Gene3D | Transferase(Phosphotransferase) domain 1 | 159 | 361 | - | - | |
Lac8g0237 | 518 | SUPERFAMILY | NTF2-like | 364 | 516 | IPR032710 | - | |
Lac8g0237 | 518 | ProSiteProfiles | Protein kinase domain profile. | 83 | 339 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0237 | 518 | Pfam | Protein kinase domain | 87 | 339 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0237 | 518 | CDD | PKc_MAPKK_plant_like | 84 | 343 | - | - | |
Lac8g0237 | 518 | Gene3D | Phosphorylase Kinase; domain 1 | 77 | 158 | - | - | |
Lac8g0237 | 518 | FunFam | mitogen-activated protein kinase kinase 3 | 56 | 164 | - | - | |
Lac8g0237 | 518 | SUPERFAMILY | Protein kinase-like (PK-like) | 85 | 369 | IPR011009 | - | |
Lac8g0237 | 518 | ProSitePatterns | Protein kinases ATP-binding region signature. | 89 | 112 | IPR017441 | GO:0005524(InterPro) | |
Lac8g0237 | 518 | ProSiteProfiles | Nuclear transport factor 2 domain profile. | 366 | 516 | IPR018222 | - | |
Lac8g0237 | 518 | Gene3D | - | 362 | 517 | - | - | |
Lac8g0237 | 518 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 203 | 215 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0237 | 518 | SMART | serkin_6 | 83 | 339 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac6g3038 | Lac-Chr6:47962295 | Lac8g0237 | Lac-Chr8:2622693 | 1.20E-64 | dispersed | |
Lac6g3082 | Lac-Chr6:48366392 | Lac8g0237 | Lac-Chr8:2622693 | 8.50E-63 | dispersed | |
Lac8g0237 | Lac-Chr8:2622693 | Lac8g1900 | Lac-Chr8:37256127 | 7.60E-28 | dispersed | |
Lac2g1839 | Lac-Chr2:18412712 | Lac8g0237 | Lac-Chr8:2622693 | 1.30E-12 | transposed | |
Lac6g1293 | Lac-Chr6:12965366 | Lac8g0237 | Lac-Chr8:2622693 | 6.50E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86353 | PF00069 | Pkinase | 1.70E-59 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g0237 | K20607 | - | csv:101217978 | 1001.89 |