Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0237 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCGATGGATTCCCCTGTGGACCCTTCCGATTCCTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGGTCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAGTGCACATCTTGGCTCGCTGATGATTTGGGGAGTAGTGAGAGGACATACCGTTGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGCGGCGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCTTTGAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGTGAAGCCCCCTGTTCTGAGGGTCTCGTGGAGTTTCATGGAGCATTTTATACCCCTGACTCTGGGCAAATAAGCATAGCTTTGGAGTACATGGATGGAGGATCATTGGCCGATGTCCTGCGTTTGAAGAAATGTATACCTGAGCCTGTTCTTTCGTCTATGTTTCAGAAACTTCTTCATGGTCTAAGTTATCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTGCTTGTAAATCTCAAGGGTGAAGCAAAAATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCGGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATACTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCATCTCCATCACCGTCAAAACAGAAGTTTTCACCGGAGTTTTGCTCGTTTGTTGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAAAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTTTATACCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGACATTCGAAGTACATTAGCGGGAGACTGGCCTCTTGAAAAATTAGTTCATGTCGTCGAAAAACTCCAATGCCGAGCTCACGGTCAAGATGGAGTTGCCATAAGGGTGTCGGGATCTTTCATCATCGGGAACCAGTTCCTTATATGTGGAGACGGTGTACAAGTCGAGGGATTGCCAAATTTTAAGGATCTTGCCATTGATGTGGCGAGTAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATAGAACCGAGCAACCTCATCGGTCGCTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG 1557 43.42 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDLGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDEFWHHTKALYHESSTLSFSGKQFSGPNDIFAKLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGQDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLAIDVASKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2622693 2627206 - Lag0027624.1 Lac8g0237 616071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0237 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 65 372 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac8g0237 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Lac8g0237 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Lac8g0237 518 Gene3D Transferase(Phosphotransferase) domain 1 159 361 - -
Lac8g0237 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Lac8g0237 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0237 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0237 518 CDD PKc_MAPKK_plant_like 84 343 - -
Lac8g0237 518 Gene3D Phosphorylase Kinase; domain 1 77 158 - -
Lac8g0237 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Lac8g0237 518 SUPERFAMILY Protein kinase-like (PK-like) 85 369 IPR011009 -
Lac8g0237 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524(InterPro)
Lac8g0237 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Lac8g0237 518 Gene3D - 362 517 - -
Lac8g0237 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g0237 518 SMART serkin_6 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0237 K20607 - - csv:101217978 1001.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g3038 Lac-Chr6:47962295 Lac8g0237 Lac-Chr8:2622693 1.20E-64 dispersed
Lac6g3082 Lac-Chr6:48366392 Lac8g0237 Lac-Chr8:2622693 8.50E-63 dispersed
Lac8g0237 Lac-Chr8:2622693 Lac8g1900 Lac-Chr8:37256127 7.60E-28 dispersed
Lac2g1839 Lac-Chr2:18412712 Lac8g0237 Lac-Chr8:2622693 1.30E-12 transposed
Lac6g1293 Lac-Chr6:12965366 Lac8g0237 Lac-Chr8:2622693 6.50E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1054 . 160 470 MAP Kinase Kinase Gene Family AT4G26070 68.1 3.3e-128 455.7
Lac6g3082 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 67.5 8.0e-127 451.1
Lac6g3038 . 16 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 2.2e-108 389.8
Lac3g1054 . 133 443 MAP Kinase Kinase Gene Family AT4G29810 67.5 3.6e-127 452.2
Lac6g3082 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 64.8 1.8e-118 423.3
Lac6g3038 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 8.9e-110 394.4
Lac8g0237 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 2.2e-229 792.3
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT1G51660 69.1 1.1e-126 450.7
Lac10g0307 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.6 5.9e-83 305.4
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT3G21220 67.7 4.8e-127 451.8
Lac10g0307 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 1.0e-84 311.2
Lac6g3038 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Lac6g3082 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 57.3 1.4e-110 397.1
Lac3g1054 . 139 469 MAP Kinase Kinase Gene Family AT5G56580 56.8 1.9e-110 396.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.3 6.4e-107 384.8
Lac12g2499 . 76 339 MAP Kinase Kinase Gene Family AT1G18350 52.8 9.0e-77 284.6
Lac10g0307 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 3.1e-79 292.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.4e-114 410.2
Lac12g2499 . 80 339 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.8e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86353 PF00069 Pkinase 1.70E-59 CL0016 Lac PK