Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0237 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCGATGGATTCCCCTGTGGACCCTTCCGATTCCTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGGTCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAGTGCACATCTTGGCTCGCTGATGATTTGGGGAGTAGTGAGAGGACATACCGTTGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGCGGCGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCTTTGAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGTGAAGCCCCCTGTTCTGAGGGTCTCGTGGAGTTTCATGGAGCATTTTATACCCCTGACTCTGGGCAAATAAGCATAGCTTTGGAGTACATGGATGGAGGATCATTGGCCGATGTCCTGCGTTTGAAGAAATGTATACCTGAGCCTGTTCTTTCGTCTATGTTTCAGAAACTTCTTCATGGTCTAAGTTATCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTGCTTGTAAATCTCAAGGGTGAAGCAAAAATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCGGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATACTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCATCTCCATCACCGTCAAAACAGAAGTTTTCACCGGAGTTTTGCTCGTTTGTTGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAAAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTTTATACCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGACATTCGAAGTACATTAGCGGGAGACTGGCCTCTTGAAAAATTAGTTCATGTCGTCGAAAAACTCCAATGCCGAGCTCACGGTCAAGATGGAGTTGCCATAAGGGTGTCGGGATCTTTCATCATCGGGAACCAGTTCCTTATATGTGGAGACGGTGTACAAGTCGAGGGATTGCCAAATTTTAAGGATCTTGCCATTGATGTGGCGAGTAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATAGAACCGAGCAACCTCATCGGTCGCTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG 1557 43.42 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDLGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDEFWHHTKALYHESSTLSFSGKQFSGPNDIFAKLSDIRSTLAGDWPLEKLVHVVEKLQCRAHGQDGVAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLAIDVASKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2622693 2627206 - Lag0027624.1 Lac8g0237 616071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0237 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 65 372 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac8g0237 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Lac8g0237 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Lac8g0237 518 Gene3D Transferase(Phosphotransferase) domain 1 159 361 - -
Lac8g0237 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Lac8g0237 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0237 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0237 518 CDD PKc_MAPKK_plant_like 84 343 - -
Lac8g0237 518 Gene3D Phosphorylase Kinase; domain 1 77 158 - -
Lac8g0237 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Lac8g0237 518 SUPERFAMILY Protein kinase-like (PK-like) 85 369 IPR011009 -
Lac8g0237 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524(InterPro)
Lac8g0237 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Lac8g0237 518 Gene3D - 362 517 - -
Lac8g0237 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g0237 518 SMART serkin_6 83 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g3038 Lac-Chr6:47962295 Lac8g0237 Lac-Chr8:2622693 1.20E-64 dispersed
Lac6g3082 Lac-Chr6:48366392 Lac8g0237 Lac-Chr8:2622693 8.50E-63 dispersed
Lac8g0237 Lac-Chr8:2622693 Lac8g1900 Lac-Chr8:37256127 7.60E-28 dispersed
Lac2g1839 Lac-Chr2:18412712 Lac8g0237 Lac-Chr8:2622693 1.30E-12 transposed
Lac6g1293 Lac-Chr6:12965366 Lac8g0237 Lac-Chr8:2622693 6.50E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86353 PF00069 Pkinase 1.70E-59 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0237 K20607 - csv:101217978 1001.89