Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0240 ATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGGCGAAAATGCCTACCGGACTGCGTTTTCGCGCCGTATTTCCCGCCGGAGGAGCCGCAAAAGTTTGCCAACGTCCACAAGATCTTCGGTGCCAGCAATGTCAGCAAATTGCTGAATGAAGTTCAGCCACACCAGCGGGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTCGGTGCCATCTCCATCCTCCAAAGGCAAGTCATCAAGCTTCAGAAAGAACTCGATGCCACTAACGCCGATCTCATTCGCTATGCTTGTAGCGAAATCCCCGCCCCGTCCCCGTCCCCGTCCTCGTCGTCGCAGTACGCTCGAAGGTCGTCCTCGACGAGCCATGAGGGAAGCTCATCCACCACTAGCTATGGCCACTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAACAATGGCCCTTGTGGAGATGGCCATGATCACAAAGGAGAATACAAGTAA 543 54.88 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPAPSPSPSSSSQYARRSSSTSHEGSSSTTSYGHYYSGLYFSPWSNNNNGPCGDGHDHKGEYK 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2655989 2656531 + Lag0027627.1 Lac8g0240 616074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0240 180 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lac8g0240 180 MobiDBLite consensus disorder prediction 120 147 - -
Lac8g0240 180 Coils Coil 89 109 - -
Lac8g0240 180 MobiDBLite consensus disorder prediction 160 180 - -
Lac8g0240 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 129 - -
Lac8g0240 180 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0481 Lac-Chr10:3716999 Lac8g0240 Lac-Chr8:2655989 5.50E-49 dispersed
Lac3g0157 Lac-Chr3:1085354 Lac8g0240 Lac-Chr8:2655989 6.30E-57 dispersed
Lac8g0240 Lac-Chr8:2655989 Lac9g0565 Lac-Chr9:10928658 3.90E-40 dispersed
Lac1g3558 Lac-Chr1:54791489 Lac8g0240 Lac-Chr8:2655989 6.40E-38 transposed
Lac8g2875 Lac-Chr8:45888163 Lac8g0240 Lac-Chr8:2655989 1.10E-37 transposed
Lac8g0240 Lac-Chr8:2655989 Lac8g2566 Lac-Chr8:43367021 4.20E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24243 PF03195 LOB 2.50E-42 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0240 - - - 0.0