Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0254 ATGGAGTTCCCTTCTTCTTCTTCTTCTTCCTCTTCTTCTCCGTTTCTCTCTCAGATCCTCGAATCTCAGAATCCGGAATCTTCTGCGGAGCCTCCAAGCCTCCGCCCAGCTCCAGATTCATCCCGACCTTCATCGAAGAAATGGAAGCCATATCCGAGCTTCTCACAACTCGCAGTTGGACCACCCACTTCGTCAATTCCACTCCCCCAATGTTCGCCTATCGCAATGCTTCAACGATCTCTCTCACACCGATTGCCTTCTCTGCTACGCCGCCAGCCGCACCTCCTTGCCGCGGTGCCTCCCGCCGTCGCCGCCCGGATCTTCCTCGACGGATGCTTCCTCCGCTACGACAATTACAGCTTCTACAAAGAATCCACCGATTCGGTTAGGGATTCTGTGAATTGCACCTCGGAATTGGGGGAAATCGGTGAATCGGAGAGGTTAGGGTTTGAGGAGAATGTTAGGGTTGTTGTTGAAGCTGTGACGAGGACGGCCATGGCGAAGGGCGGATTTGGGATTGGGGAAGTGAATGGGTTGTTTGGTTTGGCGCAGTGTTGGGGGAGTGTGGAGCCTGAGGGGTGCAGGGCTTGCTTGGAGAAGGCGAAGAGGAGTATTAGGAGTTGCTCGCCGAGTAGAGAAGGGAGGGCTTTGAATGCTGGGTGTTATTTGAGGTATTCGACTGTGAAGTTCTATAATGATAAGGAAGAAGAACGGGATCATGATGGATTTTCGGGAAGAAGAGCTGCAGTTGCCATTGCCTTAGCTTCAGCTGCCGCCTTGATCATTTCCTGTTCTGCTGCTTTTGCATGCTATGCAAGAATATCAAAGTTCAAAAAAGAGAAGAAAAAACAGTCCCTTATTCCAATTTCCTTTAAGGATTCCGATTTGAATTTCAAGTATGAAACGCTTGAAAAGGCAACTAATTACTTCAACCCATCAAGTAAGATAGGCCAAGGTGGAGCTGGTTCTGTATATAAAGGGACTCTTCCAAGTGGGCAGATTGTTGCTGTGAAGAGATTGGTTTTCCATACTAGGCAATGGGTTGATGAGTTCTTCAATGAGGTGAATTTGATCCGTGGAATCCAACACAAGAACCTTGTTGCCCTTTTAGGTTGCAGCATTGAAGGACCTGAAAGTCTGCTGGTCTACGAGTATGTCCCAAACCGGAGCCTCGATCACTTCATTTTCGATAAGAACAACGTTCAGATTCTAAATTGGAAGCAGCGTTTCAACATTATTGTGGGAACAGCTGAGGGGCTTGCACATCTTCATGAAGGTTGTAAAATAAGAATAGTCCATAGAGACATAAAGAGTAGCAATGTTCTACTGGATGAGAATTTCAATCCAAAGATTGCGGATTTTGGCCTCGCTCGGCATTTTGCTACTGATCAGACTCATCTTAGCACGGGAATTGCCGGGACACTAGGTTACATGGCACCTGAATATCTCGTTCGAGGACAACTTACAGAAAAAGCAGATGTTTATAGCTTTGGAGTGCTGATACTTGAAATTGTTTGCGGTAGAAGAAACAGCTCCTGCACAGAGAACTCTACCCCACTCCTCCAAACAGTTTGGGATCTGTACAAATCAGAGAGATTAACTGAAGCCATTGACTCATGCCTGAACAAGGATTACCCTGCAAAAGAAGCCATGGATGTTCTGCAAATAGGCCTTTTATGCACACAAGCTCTAGCTTCTCTGAGACCGTCAATGGCGACGATAGTGAAACTGCTAACAAGTGAAGGAGAAAGGAAGGTTGGCATCCCAGAACAACCTCCATTTCTGAATCCCTGTGGACCCTCAAGAAGGTCTTGCAGAATTAGTAGCTTGGTATCTCATGCAGTTTCCAAACTTGAAGTTTCTTCTTGCACATCAACAGATTCAGGTTCTTCTTCTAATTTACCTTCAAGAAGTGGAGATTTTGTTGAATTAAATTCAAATTGA 1944 46.19 MEFPSSSSSSSSSPFLSQILESQNPESSAEPPSLRPAPDSSRPSSKKWKPYPSFSQLAVGPPTSSIPLPQCSPIAMLQRSLSHRLPSLLRRQPHLLAAVPPAVAARIFLDGCFLRYDNYSFYKESTDSVRDSVNCTSELGEIGESERLGFEENVRVVVEAVTRTAMAKGGFGIGEVNGLFGLAQCWGSVEPEGCRACLEKAKRSIRSCSPSREGRALNAGCYLRYSTVKFYNDKEEERDHDGFSGRRAAVAIALASAAALIISCSAAFACYARISKFKKEKKKQSLIPISFKDSDLNFKYETLEKATNYFNPSSKIGQGGAGSVYKGTLPSGQIVAVKRLVFHTRQWVDEFFNEVNLIRGIQHKNLVALLGCSIEGPESLLVYEYVPNRSLDHFIFDKNNVQILNWKQRFNIIVGTAEGLAHLHEGCKIRIVHRDIKSSNVLLDENFNPKIADFGLARHFATDQTHLSTGIAGTLGYMAPEYLVRGQLTEKADVYSFGVLILEIVCGRRNSSCTENSTPLLQTVWDLYKSERLTEAIDSCLNKDYPAKEAMDVLQIGLLCTQALASLRPSMATIVKLLTSEGERKVGIPEQPPFLNPCGPSRRSCRISSLVSHAVSKLEVSSCTSTDSGSSSNLPSRSGDFVELNSN 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2842891 2846038 - Lag0027641.1 Lac8g0254 616088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0254 647 Gene3D Phosphorylase Kinase; domain 1 270 385 - -
Lac8g0254 647 ProSiteProfiles Gnk2-homologous domain profile. 130 230 IPR002902 -
Lac8g0254 647 MobiDBLite consensus disorder prediction 1 49 - -
Lac8g0254 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g0254 647 FunFam Cysteine-rich receptor-like protein kinase 2 386 586 - -
Lac8g0254 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 168 608 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lac8g0254 647 FunFam Cysteine-rich receptor-like protein kinase 2 277 385 - -
Lac8g0254 647 Pfam Protein kinase domain 312 555 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0254 647 SUPERFAMILY Protein kinase-like (PK-like) 286 578 IPR011009 -
Lac8g0254 647 ProSiteProfiles Protein kinase domain profile. 310 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0254 647 MobiDBLite consensus disorder prediction 1 30 - -
Lac8g0254 647 CDD STKc_IRAK 316 579 - -
Lac8g0254 647 SMART serkin_6 310 559 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g0254 647 Gene3D - 144 230 IPR038408 -
Lac8g0254 647 Gene3D Transferase(Phosphotransferase) domain 1 386 587 - -
Lac8g0254 647 MobiDBLite consensus disorder prediction 622 647 - -
Lac8g0254 647 FunFam Cysteine-rich receptor-like protein kinase 3 132 230 - -
Lac8g0254 647 Pfam Salt stress response/antifungal 145 227 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1291 Lac-Chr6:12958609 Lac8g0254 Lac-Chr8:2842891 7.70E-110 dispersed
Lac6g1293 Lac-Chr6:12965366 Lac8g0254 Lac-Chr8:2842891 7.90E-115 dispersed
Lac8g0254 Lac-Chr8:2842891 Lac10g0745 Lac-Chr10:5774095 9.30E-84 dispersed
Lac8g0254 Lac-Chr8:2842891 Lac13g0181 Lac-Chr13:1270615 1.60E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86354 PF00069 Pkinase 1.20E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0254 - - - 0.0