Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0287 ATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCATTGAGATCAAAGGCTTTGGTGATACACAGATGATGCTGAAGGAGAAAACAGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTCACTCCTTTTCCAATTCAACAGCTTCTGCTTTCAAACGATCTAGATATTTTATTTAACAGAGGTCGAGTACCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCGAATTTGCAAACACCTGATGCAAGCAGTGGGAATTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTTAACATCACAAGGTTGGAAACTTCTTAGCGATCAAAATGGAGATGTAAAATCACATATGCAGAGAAACATTCTCACTCCCCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCTTAGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATTTATGTGGGGTCATGTATACAGACTGAAGCAGAAGTAGAGGCTTTGTCAAATAACGTGGGGATTACTGCTGTATTGAATTTTCAAAGTTCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGTTAATCAACGAGTCATGCCAAAAATATGATATTCTCATGATCAACTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTTCCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAGAAGAACCACCGAGTTTTTGTAACTTGTACCACTGGTTTTGATCGACCCCCAGCAAGTGTGATTGCATATTTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTGGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCCAGTCACAAAGGTGGCCCAAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTACAAGTACATCACAAATGGTCAATGGAGGCACTCAACAACTTCACCTGCTGAAAGAGACGATAGGGGAAATCTCAACAATGTAATAGTCATCGGCGACACTGCCAGTGTTAGGCCTTCGGTTCAACCGCAAAAAAAGGATGCAAATATTGTGAAGGTAATTGAAAGACCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGTGTTGCATTTTCTGTATGTCCAATTAGATTAACTCCCAAGTAG 1434 42.05 MVGDTLKKASDSSGVKLIEIKGFGDTQMMLKEKTGSFSLVLERPFTPFPIQQLLLSNDLDILFNRGRVPIATWKKEILASNLQTPDASSGNSGFATFSSKFLTSQGWKLLSDQNGDVKSHMQRNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEAEVEALSNNVGITAVLNFQSSTEAENWGINSKLINESCQKYDILMINYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRPPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTTSPAERDDRGNLNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3356020 3361318 + Lag0027674.1 Lac8g0287 616121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0287 477 Gene3D Protein tyrosine phosphatase superfamily 170 436 IPR029021 -
Lac8g0287 477 CDD E_set_AMPKbeta_like_N 344 423 - -
Lac8g0287 477 Gene3D Immunoglobulins 331 427 IPR013783 -
Lac8g0287 477 Pfam Glycogen recognition site of AMP-activated protein kinase 344 425 IPR032640 -
Lac8g0287 477 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 331 427 - -
Lac8g0287 477 CDD DSP_laforin-like 176 322 IPR045204 GO:0019203(InterPro)
Lac8g0287 477 SUPERFAMILY E set domains 341 424 IPR014756 -
Lac8g0287 477 Pfam Dual specificity phosphatase, catalytic domain 186 309 IPR000340 GO:0016311(InterPro)
Lac8g0287 477 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 1 471 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Lac8g0287 477 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 169 315 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0287 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35