Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g0305 | ATGAAAGAGAAGAGTGAAAGTGGAGGTGGGTATGTGAGGGCAGATCAGATAGATCTGAAGAGCTTGGACGAGCAGTTACAGAGACATTTGAGCAAAGCATGGACTATGGAGAAGAACAAGAGAAAGGAAGACGAGGAAGGCGGCGGCGGTGGTGGTGGTGCCGGAGGCGGCTTCGGAAGGCCGGCGATCACCAGGCAGGACTGGGAGATTGACCCTTCTAAACTCATCATCAAAAGCGTCATAGCTCGTGGCACTTTTGGAACTGTTCATCGTGGAATTTATGATGGCCAAGATGTTGCTGTTAAACTTCTTGACTGGGGAGAAGAGGGTCATAGGTCGGAGGCAGAAATCGCTTCTCTTAGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCTACAATTGGCTCCTCAGATCTACACATACAAACAGAAAATGGCCAAATTGGCATGCCAAGCAATATTTGTTGTGTCGTCGTTGAATATTGTCCTGGTGGTGCTCTGAAATCTTACCTCATAAAGAACCGGAGGAAAAAGCTGGCTTTCAAAGTAGTCGTCCAGCTAGCATTAGACCTTGCAAGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACAAGAACGGTAAAAATTGCAGACTTCGGTGTTGCTCGTGTTGAGGCCTCAAATCCCAATGATATGACTGGCGAAACCGGAACCCTTGGTTATATGGCTCCAGAGGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTCTACAGCTTTGGCATCTGTTTGTGGGAAATATACTGCTGCGATATGCCGTATCCCGACCTTAGCTTCTCAGAAGTGACTTCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCGAGCTCGCTTTCAAACGTAATGAAGCGATGTTGGGATGCTAACCCTGACAAGCGTCCAGAGATGGACGAGGTTGTAACCATGTTGGAAGCAATCGACACGTCGAAGGGTGGAGGTATGATCCCCCTCGATCAGTCTCAAGGCTGTTTTTGCTTCCGCAGGTACCGAGGGCCTTGA | 1137 | 47.32 | MKEKSESGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKRKEDEEGGGGGGGAGGGFGRPAITRQDWEIDPSKLIIKSVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLHIQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLSNVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3607110 | 3610388 | + | Lag0027692.1 | Lac8g0305 | 616139 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g0305 | 378 | CDD | STKc_MAP3K-like | 81 | 349 | - | - | |
Lac8g0305 | 378 | MobiDBLite | consensus disorder prediction | 30 | 48 | - | - | |
Lac8g0305 | 378 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 216 | 228 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0305 | 378 | MobiDBLite | consensus disorder prediction | 30 | 63 | - | - | |
Lac8g0305 | 378 | ProSiteProfiles | Protein kinase domain profile. | 75 | 352 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0305 | 378 | FunFam | Serine/threonine-protein kinase HT1 | 175 | 360 | - | - | |
Lac8g0305 | 378 | Gene3D | Phosphorylase Kinase; domain 1 | 62 | 159 | - | - | |
Lac8g0305 | 378 | SMART | serkin_6 | 75 | 352 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g0305 | 378 | PRINTS | Tyrosine kinase catalytic domain signature | 320 | 342 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0305 | 378 | PRINTS | Tyrosine kinase catalytic domain signature | 276 | 298 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0305 | 378 | PRINTS | Tyrosine kinase catalytic domain signature | 172 | 185 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0305 | 378 | PRINTS | Tyrosine kinase catalytic domain signature | 210 | 228 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0305 | 378 | Pfam | Protein tyrosine and serine/threonine kinase | 77 | 349 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g0305 | 378 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 53 | 350 | IPR051681 | GO:0004674(PANTHER)|GO:0005886(PANTHER) | |
Lac8g0305 | 378 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 365 | - | - | |
Lac8g0305 | 378 | FunFam | Kinase suppressor of Ras 1 | 64 | 159 | - | - | |
Lac8g0305 | 378 | SUPERFAMILY | Protein kinase-like (PK-like) | 61 | 349 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g2252 | Lac-Chr4:42223989 | Lac8g0305 | Lac-Chr8:3607110 | 4.70E-150 | dispersed | |
Lac7g0715 | Lac-Chr7:5779257 | Lac8g0305 | Lac-Chr8:3607110 | 4.50E-150 | dispersed | |
Lac8g0305 | Lac-Chr8:3607110 | Lac9g2245 | Lac-Chr9:41820390 | 4.20E-36 | dispersed | |
Lac3g0697 | Lac-Chr3:5403620 | Lac8g0305 | Lac-Chr8:3607110 | 1.40E-188 | transposed | |
Lac4g0157 | Lac-Chr4:2834852 | Lac8g0305 | Lac-Chr8:3607110 | 3.20E-28 | wgd | |
Lac8g0305 | Lac-Chr8:3607110 | Lac9g1276 | Lac-Chr9:29473805 | 9.20E-23 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86356 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-64 | CL0016 | Lac | PK |
Pathway information
