Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0332 ATGGAATCTGGCCGGTTCTTGTTTAATCCGCCGGCTTGCGGCGGCAACATGCTTTACCTTGGCGGAGCCGGTGCCGATCCTTTTCTGCGAGGAGGAAGAACGATGATGAGCATGAGCATGAGCATGCAAGAGAGTCCAAAGGGGCGACCATTTTTTAGATCCCCCGATGATCTTTACGACGATGAATATTACGACGAGCTTTACCCTGAGAAGAAGCGTCGTCTGACCCACGACCAGGTTCAAATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTAGAGCCAGAGAGGAAATCCCAACTGGCTAAGAAGTTAGGCCTGCAGCCAAGGCAGGTGGCCGTGTGGTTCCAAAACCGCCGTGCTCGGTGGAAGACGAAGCAACTCGAGAGGGACTATGATGTTCTTAAAGCCTCGTATGATTTGCTTATGTCAAACTATGACTCCATCGTCAAAGAGAATGCAGTGCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCTAGCTAAAGAGCTAGATGGAGGAGAAGCACCATTTCCATGTATAACATCGGAGCCTCTTCTAGCAGACACTGCCCATGTCTCCGCCCCACACTCCGGCAGAAAGGCTGAAGATCGCCTCAGTTCAGGGAGCGATAGCAGTGCAGTGATCGACGATAATTGTCCACAGCTGATCGACAGCGGTGATTCTTACTTCCCCAGCAACGAGTATCCGCAATGTGTACCTCTGCCTGCTGGGTTGCAAGTTGAACATGATGATAGGAATGACAATAGCAACTACTTGTTCTCAGACATGTTTGCAGCAACAAACCAACAGAATCAGGTGGGAGGGCCTTCAGCTTGGTGGGCATGGCCTTAG 858 50.12 MESGRFLFNPPACGGNMLYLGGAGADPFLRGGRTMMSMSMSMQESPKGRPFFRSPDDLYDDEYYDELYPEKKRRLTHDQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIVKENAVLKSEVASLTEKCLAKELDGGEAPFPCITSEPLLADTAHVSAPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSNEYPQCVPLPAGLQVEHDDRNDNSNYLFSDMFAATNQQNQVGGPSAWWAWP 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4019362 4022725 + Lag0027719.1 Lac8g0332 616166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0332 285 PRINTS Lambda-repressor HTH signature 106 122 IPR000047 GO:0003677(InterPro)
Lac8g0332 285 PRINTS Lambda-repressor HTH signature 97 106 IPR000047 GO:0003677(InterPro)
Lac8g0332 285 SUPERFAMILY Homeodomain-like 67 128 IPR009057 -
Lac8g0332 285 Gene3D - 66 132 - -
Lac8g0332 285 Pfam Homeodomain 71 124 IPR001356 GO:0003677(InterPro)
Lac8g0332 285 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677(InterPro)
Lac8g0332 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 248 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lac8g0332 285 FunFam Homeobox-leucine zipper protein HAT5 64 128 - -
Lac8g0332 285 SMART HOX_1 69 130 IPR001356 GO:0003677(InterPro)
Lac8g0332 285 Pfam Homeobox associated leucine zipper 126 166 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g0332 285 MobiDBLite consensus disorder prediction 194 214 - -
Lac8g0332 285 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac8g0332 285 CDD homeodomain 71 127 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2229 Lac-Chr1:43689362 Lac8g0332 Lac-Chr8:4019362 3.20E-20 dispersed
Lac5g3078 Lac-Chr5:48501541 Lac8g0332 Lac-Chr8:4019362 1.40E-14 dispersed
Lac6g0056 Lac-Chr6:467703 Lac8g0332 Lac-Chr8:4019362 7.10E-24 dispersed
Lac7g0101 Lac-Chr7:860548 Lac8g0332 Lac-Chr8:4019362 1.40E-18 dispersed
Lac8g0332 Lac-Chr8:4019362 Lac8g2600 Lac-Chr8:43637896 9.50E-65 dispersed
Lac8g0332 Lac-Chr8:4019362 Lac10g0375 Lac-Chr10:2929338 1.30E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24245 PF00046 Homeodomain 2.30E-18 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0332 K09338 - csv:101212142 471.47