Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0338 ATGAATAGAATCATCCACTCGCCGGCGTCCACATTCCGCCCCTTTCGGCGAAACCTAATCGGCTCATCCTCCGATTCCGCCACGACCGCCGTAGCCGCCGCGGCCGCCGATGAACACCCGAACTACATCCTCCTCCGCTACCAAATCCTCGACCCCGACAGCGACATTGTAGCGCAATGGAACCGCGTGTTTCTAATCACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCGGTCAGCGGGCCGGCCTGCCTGACCACCCAGATGAATCTGGCAGTGGTGATCACGTTCTTCAGAACGGTGACGGATCTGTTCTTCTTGTTGCACATGGTGCTCAAGTTTCGAACGGCGTATGTGGCTCCGAGTTCTAGGGTTTTTGGAAGAGGAGAGCTGGTTATGGATGCCAGAGCCATTGCTACGCGATATTTGAAGTCTGATTTTGTGATTGATCTCGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGACACTCAAGAGCAGATCATGCCAACAACACAATCGCTCTCCTTGTTCTGCTCCAATATGTTCCAAGGCTGTTCCTCATTTTCCCTCTCAACCAACGTATCGTCAAAACTACTGGTGTTGTTGCCAAAACTGCCTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCCAGTCATGTGTTGGGATCTACATGGTATTTGTTGTCCATAGGGCGACAGTTCTCTTGCTGGAGTTCAGAGTGTGCAAAGGAGAATGCCTCTAAGGTTCTAACTTGCCTTCCCATCTACTTGGATTGTGCCAGTTTGAATAACACAGAAAGACAATATTGGCTTAATATCACTCAAGTTACTTCCAAATGCGATCCGAGGAATAAAAATATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTTACCAATGATGTTGCCTCCTCCCACTTCTTTGCAAAGTACTTCTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATATGGACAAACTTTGGATACAACAACTTATATTGGCGAGACATTATTTTGCATATCAACCTGCATATTTGGCTTGATACTATTTTCACAACTCATTGGCAACATGCAGACATGTTTGCAATCAATGACGGTTAGACTCGAAGAATGGAGGATAAAGCGAAGGGACACCGAAGAATGGATGAGACGTCGCCAATTACCTCCAGATTTGCAAGAACGAGTACGCCGATTCGTTCAATATAAATGGGTGGCTACAAGAGGAGTTAATGAAGAATCCATATTGCGTTCGTTGCCTATCGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTATCGCTTGTTCGTCGTGTTCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCTATATGTGAACGTCTTGTCTCGTCCTTGTGTACCCAAGGAACCTACATTGTGCGAGAGGATGATCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCGACAACAAATGGCGGTCGATCGGGGTTCTTCAACTCCATCACACTAAAACCAGGTGATTTCTGTGGTGAAGAACTATTGACATGGGCCTTGATGCCAAGTTCCAATTTAAATATGCCTTCCTCTACTCGAAGTGTCCGAGCGCTCACAGAAGTCGAAGCTTTCGCTCTTCGAGCCGAGGACCTCAAGTTTGTTGCTGGTCAATTCAAACGCCTACATAGCAAGAAACTACAGCATGCCTTTAGGTATTATTCCCATCAGTGGAGGACATGGGGTGCTTGCTTGATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAAATTAGCATTGAGAGAGAGCTTATGCTACATAGATTCAATAGAACAAGATAACGAGTACGACATCGAGCTAGCAGAAGAAAACTATGACGACGACAGCGACGATGATATGTCATCTACAGACTACATGAACAAAACTCAACATCTTGGGGCCACACTTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGGGCAAACATCCAAGCCTTCCAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2133 45.48 MNRIIHSPASTFRPFRRNLIGSSSDSATTAVAAAAADEHPNYILLRYQILDPDSDIVAQWNRVFLITCLIALFIDPLYFYTSSVSGPACLTTQMNLAVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDARAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRHSRADHANNTIALLVLLQYVPRLFLIFPLNQRIVKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWSSECAKENASKVLTCLPIYLDCASLNNTERQYWLNITQVTSKCDPRNKNIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTCLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWVATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSNLNMPSSTRSVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKKLALRESLCYIDSIEQDNEYDIELAEENYDDDSDDDMSSTDYMNKTQHLGATLLASKFAANTRRGVNQKGQTSKPSSLKMPKLFKPDEPDFSMDG 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4106672 4110980 - Lag0027725.1 Lac8g0338 616172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0338 710 Pfam Ion transport protein 60 385 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g0338 710 SUPERFAMILY cAMP-binding domain-like 388 583 IPR018490 -
Lac8g0338 710 SUPERFAMILY Voltage-gated potassium channels 51 380 - -
Lac8g0338 710 MobiDBLite consensus disorder prediction 676 693 - -
Lac8g0338 710 SMART cnmp_10 458 589 IPR000595 -
Lac8g0338 710 Pfam Cyclic nucleotide-binding domain 481 568 IPR000595 -
Lac8g0338 710 Gene3D - 61 383 - -
Lac8g0338 710 MobiDBLite consensus disorder prediction 675 710 - -
Lac8g0338 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 44 692 - -
Lac8g0338 710 ProSiteProfiles cAMP/cGMP binding motif profile. 458 588 IPR000595 -
Lac8g0338 710 FunFam Cyclic nucleotide-gated ion channel 1 385 449 - -
Lac8g0338 710 CDD CAP_ED 458 589 IPR000595 -
Lac8g0338 710 MobiDBLite consensus disorder prediction 696 710 - -
Lac8g0338 710 FunFam Cyclic nucleotide-gated ion channel 1 456 574 - -
Lac8g0338 710 Gene3D Jelly Rolls 456 576 IPR014710 -
Lac8g0338 710 Gene3D Helix hairpin bin 385 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0268 Lac-Chr3:1908412 Lac8g0338 Lac-Chr8:4106672 1.50E-234 dispersed
Lac3g0695 Lac-Chr3:5380225 Lac8g0338 Lac-Chr8:4106672 6.60E-269 dispersed
Lac8g0338 Lac-Chr8:4106672 Lac8g0435 Lac-Chr8:5586285 1.80E-184 dispersed
Lac8g0338 Lac-Chr8:4106672 Lac9g2595 Lac-Chr9:44480023 3.20E-202 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0338 K05391 - csv:101216651 1286.17