Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0435 ATGTTCGATTGTGGTGGATACAAGTCGCAGTACATCGGCGGTCACAAGGAGAAATTCGTGAGGTTGGATGATTTGGATTCAAATTTGTCAGTGCCCTCTGGATCAAGCAAGATGAAGAAATGCCGATTCAACCTAGAAGGCCTCCCACTGCCATTCATCAGCCGAGCAAAGCCTCGAAACGCGTCGAAATCGTTCCGAAAGGGAGTCCAAATGAGCTCCGACGGAATCATGACCCTAGGCCGGTCGCTCCGCTCCGGCGTGTCCAGAGTCATCTTCCCCGAGGATCTGAAAGTATCGGAGCAAAAGATCTTCGATCCGCAGGACAAATCACTCCTCTTCTGGAACAAGCTGTTCGTGTTGTGCTGTATCCTCGCCGTCTCCGTCGATCCGCTGTTCTTCTACCTTCCGGTCTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCATCTCGCCGTCACCACCACCACCCTCCGTACGGCCATCGATGTGTTCTACTTGATTCGGATGGCGTTTCAGTTCCGGACGGCTTACGTTGCGCCGTCGTCGAGGGTGTTTGGTCGCGGCGAGCTTGTGATCGATCCGGCGGACATCGCTAGGCGGTATCTTCAGCGCTATTTCGTCGCCGATTTTCTCTCTGTTTTGCCTCTTCCTCAGGTGGTGGTGTGGAGGTTTCTTCACAGGTCAAAAGGTTCAGAAGTGTTGGCAACCAAACAAGCGTTGTTAAACATAGTGTTTCTTCAGTATATTCCCAGATTCATTAGATTTATACCTTTGAACATTGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTATTATCTCCTCTTGTACATGCTTGCCAGTCACATAGCGGGAGCATTTTGGTACTTGCTGGCAGTGGAGAGGAACGATGCATGTTGGCGACAAGCATGCAAAAGCAGTGGCAAATGCAACATTAACTTTTTGTACTGTGGGAATAAGCACATGTCTGGATATAAGGAGTGGAGAAATATAAGCGTTGATGTTCTCACAAAGAAATGCACTGCAATTGGAGACAATTTGCCATTCAACTATGGCATTTACACTCAGGCCATTGCCTCTGGCATTGTTCAGTCAAGGACTTTCTTCTCCAAGTTCTGCTACTGCTTGTGGTGGGGCTTACAAAATTTAAGTACACTTGGTCAAGGGCTGCTCACCAGTACCTATCCTGGAGAGGTTATCTTTTCGATACTCATTGCAATTTCTGGGCTCCTCCTCTTTGCACTATTGATTGGAAACATGCAAACGTATCTCCAATCTCTAACAGTCCGGCTGGAAGAGATGCGCATCAAGAGGAGAGACTCTGAGCAGTGGATGCACCATCGGCTGCTTCCGCCGGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTTGAAACTAGAGGAGTCGATGAAGAGAGCTTGGTTCAAAGTCTGCCTAAAGATCTTAGGAGAGACATTAAACGACATCTCTGTCTCAATTTGGTCAGAAGGGTGCCTCTATTTGCAAACATGGACGAGCGTCTACTTGACGCAATATGCGAGAGGCTAAAGCCAACACTATACACAGAGAACACATACATCGTCCGAGAAGGCGACCCAGTTGACGAAATGCTCTTCATAATCCGCGGCCGTCTCGAGAGCGTCACCACCGACGGCGGCCGGAGTGGCTTCTTCAACCGCGGCGTTTTGAAAGAAGGCGACTTCTGCGGCGAGGAGCTTCTGACATGGGCACTCGACCCCAAGTCCGGCGCCAACCTCCCGTCCTCCACCCGTACCGTCCACGCCTTGACGGAGGTGGAGGCCTTCGCCCTGGAGGCCGAGGAGCTCAAGTTCGTCGCCAGCCAGTTCCGACGGCTCCACAGCAGGCAGGTCCAGCACACGTTCAGATTCTACTCCCAGCAGTGGCGGACGTGGGCGTCGTGTTTTATACAGGCGGCGTGGCGGCGGTACATGAAGCGGAAGATGGCGGAGCTGCGGCGGAAGGAGGAGGAGGAGGAGGATGCGGCGGCTGCGGCGGCGTATAGCTCGTCGAGGCTTGGGGCGACGATTTTGGCGTCGAGATTTGCAGCGAATGCTCTTAGAGGGCATCGGATGAGGAATGTGAGCAGCGGGAGGAGCTTGATTAACTTGCAGAAGCCGTCGGAGCCTGATTTTTCTGTGTATAAAGGAGAGTGA 2208 51.77 MFDCGGYKSQYIGGHKEKFVRLDDLDSNLSVPSGSSKMKKCRFNLEGLPLPFISRAKPRNASKSFRKGVQMSSDGIMTLGRSLRSGVSRVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTHLAVTTTTLRTAIDVFYLIRMAFQFRTAYVAPSSRVFGRGELVIDPADIARRYLQRYFVADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACKSSGKCNINFLYCGNKHMSGYKEWRNISVDVLTKKCTAIGDNLPFNYGIYTQAIASGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSGANLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYMKRKMAELRRKEEEEEDAAAAAAYSSSRLGATILASRFAANALRGHRMRNVSSGRSLINLQKPSEPDFSVYKGE 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5586285 5591480 + Lag0027822.1 Lac8g0435 616269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0435 735 SUPERFAMILY Voltage-gated potassium channels 106 433 - -
Lac8g0435 735 SUPERFAMILY cAMP-binding domain-like 441 631 IPR018490 -
Lac8g0435 735 SMART cnmp_10 511 642 IPR000595 -
Lac8g0435 735 Pfam Ion transport protein 113 438 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g0435 735 CDD CAP_ED 511 642 IPR000595 -
Lac8g0435 735 FunFam Cyclic nucleotide-gated ion channel 1 509 627 - -
Lac8g0435 735 FunFam Cyclic nucleotide-gated ion channel 1 438 502 - -
Lac8g0435 735 Gene3D - 116 436 - -
Lac8g0435 735 ProSiteProfiles cAMP/cGMP binding motif profile. 511 641 IPR000595 -
Lac8g0435 735 MobiDBLite consensus disorder prediction 715 735 - -
Lac8g0435 735 ProSiteProfiles IQ motif profile. 647 676 - -
Lac8g0435 735 Coils Coil 659 682 - -
Lac8g0435 735 Pfam Cyclic nucleotide-binding domain 532 622 IPR000595 -
Lac8g0435 735 Gene3D Jelly Rolls 509 629 IPR014710 -
Lac8g0435 735 Gene3D Helix hairpin bin 438 502 - -
Lac8g0435 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 86 711 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2474 Lac-Chr6:42515033 Lac8g0435 Lac-Chr8:5586285 4.80E-302 dispersed
Lac7g0144 Lac-Chr7:1126311 Lac8g0435 Lac-Chr8:5586285 5.70E-22 dispersed
Lac7g0145 Lac-Chr7:1133298 Lac8g0435 Lac-Chr8:5586285 1.50E-106 dispersed
Lac8g0338 Lac-Chr8:4106672 Lac8g0435 Lac-Chr8:5586285 1.80E-184 dispersed
Lac8g0435 Lac-Chr8:5586285 Lac9g2595 Lac-Chr9:44480023 1.50E-207 dispersed
Lac8g0435 Lac-Chr8:5586285 Lac11g0144 Lac-Chr11:1326104 5.80E-215 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0435 K05391 - csv:101221166 1347.8