Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g0534 | ATGGCTGGTTGTAGACTTAAGGTTTCATTGGTGTTGGTTTCAATAATGGCTGTTTTCATGCCAACTCTCAGAGCTGGCATTGCCGAGTTTGATGAATATTTGCTGCAAAAGGCCGACGAAGCCAAACAAGCTGCTCTTGAGGCCTTCCATCCTGACCCCATGAATGTTACTGACCATCTCAACCATCATGTTCATTTAGCTTTGCAGGGAGGAAATAGCACCAGGAGGAACCTGGGGAAATACACTGGCCCTTGCTTGGCCACAAACCCGATCGACCGCTGCTGGCGTTGCAACCCAAAATGGGCCAACAAACGTAAGAGGCTTGCCAAGTGCGTGCTTGGTTTTGGCCGAAAGACCACCGGTGGCAAGAGGGGCAAGATCTACGTCGTTACCGATGCATCGGATGACGATGTCGTGAACCCTAAACCCGGAACCCTCCGATATGCTGCAATTCAAAAACGTCCATTGTGGATCATATTTGGGCGCAGCATGATCATCAAGCTGACCAAGGAACTGATGGTGACGAGTCACAAGACCATCGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAGTTCGCCCGGAATGTGATCATCCACGGCCTTCACATCCACCACATTATGGCGGCCGGCGGTGGCATGATCCGAGACACCCACAACCATGTCGGCATCCGAACCGTCAGCGACGGAGACGGCATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCACCTCTCCATGTCCAACTGCCAGGACGGACTCATCGACGCAATCCAAGGCTCCACTGCCATCACAGTCTCAAACTCCCATTTCACTCATCACAACGACGTCATGTTGTTCGGTGCCAGCGACTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCTTTCAACCATTTCGGCAAAGGATTGGTGCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCACGTCGTCAACAACGACTACACCCACTGGCTCATGTACGCCATCGGTGGCAGCCAACATCCCACCATCATCAGCCAAGGAAACCGTTTCATTGCCCCACCAAACCCTGCAGCAAGACAGATTACAAACAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCAGAAGGGGATCTGATGATGAATGGAGCTTATTTCGTTCAGTCTGGAAATCCAAGCAAACGAAGGCCATACAGCAGATTCGACATGATCAAGGCTAAGCCTGGCACTTTTGTTAGAAGGCTCACACGCCTCGCTGGCTCACTCAACTGTTATGTCGGTCGCCCTTGCTAA | 1317 | 51.33 | MAGCRLKVSLVLVSIMAVFMPTLRAGIAEFDEYLLQKADEAKQAALEAFHPDPMNVTDHLNHHVHLALQGGNSTRRNLGKYTGPCLATNPIDRCWRCNPKWANKRKRLAKCVLGFGRKTTGGKRGKIYVVTDASDDDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIKLTKELMVTSHKTIDARGANVHIAYGAGLSIQFARNVIIHGLHIHHIMAAGGGMIRDTHNHVGIRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFVQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRLAGSLNCYVGRPC | 438 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7687450 | 7688925 | + | Lag0027921.1 | Lac8g0534 | 616368 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g0534 | 438 | PRINTS | Pollen allergen Amb family signature | 111 | 128 | IPR018082 | - | |
Lac8g0534 | 438 | PRINTS | Pollen allergen Amb family signature | 135 | 160 | IPR018082 | - | |
Lac8g0534 | 438 | PRINTS | Pollen allergen Amb family signature | 171 | 187 | IPR018082 | - | |
Lac8g0534 | 438 | PRINTS | Pollen allergen Amb family signature | 379 | 403 | IPR018082 | - | |
Lac8g0534 | 438 | PRINTS | Pollen allergen Amb family signature | 409 | 432 | IPR018082 | - | |
Lac8g0534 | 438 | PRINTS | Pollen allergen Amb family signature | 315 | 334 | IPR018082 | - | |
Lac8g0534 | 438 | PRINTS | Pollen allergen Amb family signature | 337 | 356 | IPR018082 | - | |
Lac8g0534 | 438 | PRINTS | Pollen allergen Amb family signature | 235 | 256 | IPR018082 | - | |
Lac8g0534 | 438 | SUPERFAMILY | Pectin lyase-like | 89 | 428 | IPR011050 | - | |
Lac8g0534 | 438 | PANTHER | PECTATE LYASE 18-RELATED | 20 | 435 | IPR045032 | GO:0030570(InterPro) | |
Lac8g0534 | 438 | SMART | amb_all | 163 | 360 | IPR002022 | - | |
Lac8g0534 | 438 | Pfam | Pectate lyase, N terminus | 27 | 78 | IPR007524 | GO:0030570(InterPro) | |
Lac8g0534 | 438 | Gene3D | - | 88 | 431 | IPR012334 | - | |
Lac8g0534 | 438 | Pfam | Pectate lyase | 173 | 354 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0370 | Lac-Chr10:2904891 | Lac8g0534 | Lac-Chr8:7687450 | 3.70E-177 | dispersed | |
Lac13g0288 | Lac-Chr13:2053129 | Lac8g0534 | Lac-Chr8:7687450 | 1.40E-176 | dispersed | |
Lac8g0534 | Lac-Chr8:7687450 | Lac8g2540 | Lac-Chr8:43165558 | 3.90E-134 | dispersed | |
Lac8g0534 | Lac-Chr8:7687450 | Lac6g0050 | Lac-Chr6:432129 | 3.40E-186 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g0534 | K01728 | - | csv:101202789 | 808.52 |