Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0534 ATGGCTGGTTGTAGACTTAAGGTTTCATTGGTGTTGGTTTCAATAATGGCTGTTTTCATGCCAACTCTCAGAGCTGGCATTGCCGAGTTTGATGAATATTTGCTGCAAAAGGCCGACGAAGCCAAACAAGCTGCTCTTGAGGCCTTCCATCCTGACCCCATGAATGTTACTGACCATCTCAACCATCATGTTCATTTAGCTTTGCAGGGAGGAAATAGCACCAGGAGGAACCTGGGGAAATACACTGGCCCTTGCTTGGCCACAAACCCGATCGACCGCTGCTGGCGTTGCAACCCAAAATGGGCCAACAAACGTAAGAGGCTTGCCAAGTGCGTGCTTGGTTTTGGCCGAAAGACCACCGGTGGCAAGAGGGGCAAGATCTACGTCGTTACCGATGCATCGGATGACGATGTCGTGAACCCTAAACCCGGAACCCTCCGATATGCTGCAATTCAAAAACGTCCATTGTGGATCATATTTGGGCGCAGCATGATCATCAAGCTGACCAAGGAACTGATGGTGACGAGTCACAAGACCATCGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAGTTCGCCCGGAATGTGATCATCCACGGCCTTCACATCCACCACATTATGGCGGCCGGCGGTGGCATGATCCGAGACACCCACAACCATGTCGGCATCCGAACCGTCAGCGACGGAGACGGCATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCACCTCTCCATGTCCAACTGCCAGGACGGACTCATCGACGCAATCCAAGGCTCCACTGCCATCACAGTCTCAAACTCCCATTTCACTCATCACAACGACGTCATGTTGTTCGGTGCCAGCGACTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCTTTCAACCATTTCGGCAAAGGATTGGTGCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCACGTCGTCAACAACGACTACACCCACTGGCTCATGTACGCCATCGGTGGCAGCCAACATCCCACCATCATCAGCCAAGGAAACCGTTTCATTGCCCCACCAAACCCTGCAGCAAGACAGATTACAAACAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCAGAAGGGGATCTGATGATGAATGGAGCTTATTTCGTTCAGTCTGGAAATCCAAGCAAACGAAGGCCATACAGCAGATTCGACATGATCAAGGCTAAGCCTGGCACTTTTGTTAGAAGGCTCACACGCCTCGCTGGCTCACTCAACTGTTATGTCGGTCGCCCTTGCTAA 1317 51.33 MAGCRLKVSLVLVSIMAVFMPTLRAGIAEFDEYLLQKADEAKQAALEAFHPDPMNVTDHLNHHVHLALQGGNSTRRNLGKYTGPCLATNPIDRCWRCNPKWANKRKRLAKCVLGFGRKTTGGKRGKIYVVTDASDDDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIKLTKELMVTSHKTIDARGANVHIAYGAGLSIQFARNVIIHGLHIHHIMAAGGGMIRDTHNHVGIRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFVQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRLAGSLNCYVGRPC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7687450 7688925 + Lag0027921.1 Lac8g0534 616368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0534 438 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Lac8g0534 438 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Lac8g0534 438 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Lac8g0534 438 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Lac8g0534 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Lac8g0534 438 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Lac8g0534 438 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Lac8g0534 438 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Lac8g0534 438 SUPERFAMILY Pectin lyase-like 89 428 IPR011050 -
Lac8g0534 438 PANTHER PECTATE LYASE 18-RELATED 20 435 IPR045032 GO:0030570(InterPro)
Lac8g0534 438 SMART amb_all 163 360 IPR002022 -
Lac8g0534 438 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570(InterPro)
Lac8g0534 438 Gene3D - 88 431 IPR012334 -
Lac8g0534 438 Pfam Pectate lyase 173 354 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0370 Lac-Chr10:2904891 Lac8g0534 Lac-Chr8:7687450 3.70E-177 dispersed
Lac13g0288 Lac-Chr13:2053129 Lac8g0534 Lac-Chr8:7687450 1.40E-176 dispersed
Lac8g0534 Lac-Chr8:7687450 Lac8g2540 Lac-Chr8:43165558 3.90E-134 dispersed
Lac8g0534 Lac-Chr8:7687450 Lac6g0050 Lac-Chr6:432129 3.40E-186 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0534 K01728 - csv:101202789 808.52