Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0535 ATGGAGGCGCCAGCTTTGGTACTGAAGAACGAGGAGAATCTCAGAATATGTTGGACGGAAGGTCAAACTCAGGCCATGAGACGTGTCAAGCGACGGCGGAGAGAGCCTGCGACCGCCACCGCCGTCGATCAAACTAATAAGCAGCCGGGTCTGCAGCAACAAACCGATCAAGCTCCGACCACCACTACGAAGCGGAGTTCGAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGATTCGAAGCTCATTTATGGGATAAGCTTTCTTGGAACATGACACAGAAGAAGAAGGGCAAGCAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACCATCACTAATTTCCCAATATCAGAATATGAGAAGGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCATTGAGAAGAAAGAGCAGTGGATTTTCAAGAGGTGTATCAAAATATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTATCTCTATCTTGGAACTTACAGCACTCAAGAGGAAGCTGCTCGAGCTTATGATATGGCAGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGCCGAAGCCTCTGCCACCGCCCGCCGCCCCGATCGAAGCCCATATGGCGTCGGACCCCCACAAAGAACTCTGCAACTCCAGCTCCATCCCAGCAGAAGACACTTCCCTCTTCAAAAATCATCACTATGATGCCAATTCCCTCCATTCCCTTCAAAAGCAAGAGCTTCTTGAAAGCTGCAGCACCCCTCTTAGCAGCTATGCTAAATCTTCTTCTCCGTCAGCACTCGACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTGGTTGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGAGAAGAGGCCAAGACTCGAGTGCAGCTCGACAGTGTCTTCGATGAGTTTGGAGACATCTTCTGTGATAGACTTGCAGATGTACCGTTTGTTTGCAGCTCCAACAAAGAGCAGCAAGAAAGTGAGCTTCATTCGTTCTTTAATGGCACATTTCATCGCTTCAAAGCATCCTGA 1173 47.91 MEAPALVLKNEENLRICWTEGQTQAMRRVKRRRREPATATAVDQTNKQPGLQQQTDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWPKPLPPPAAPIEAHMASDPHKELCNSSSIPAEDTSLFKNHHYDANSLHSLQKQELLESCSTPLSSYAKSSSPSALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFGDIFCDRLADVPFVCSSNKEQQESELHSFFNGTFHRFKAS 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7699221 7702420 + Lag0027922.1 Lac8g0535 616369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0535 390 CDD AP2 166 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Lac8g0535 390 Pfam AP2 domain 67 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 Pfam AP2 domain 166 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 54 263 - -
Lac8g0535 390 CDD AP2 67 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 Gene3D AP2/ERF domain 67 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 Gene3D AP2/ERF domain 166 226 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 SUPERFAMILY DNA-binding domain 67 133 IPR016177 GO:0003677(InterPro)
Lac8g0535 390 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 MobiDBLite consensus disorder prediction 25 71 - -
Lac8g0535 390 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 MobiDBLite consensus disorder prediction 39 67 - -
Lac8g0535 390 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677(InterPro)
Lac8g0535 390 SMART rav1_2 167 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0535 390 SMART rav1_2 68 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1794 Lac-Chr6:28856523 Lac8g0535 Lac-Chr8:7699221 3.60E-67 dispersed
Lac7g2109 Lac-Chr7:34611476 Lac8g0535 Lac-Chr8:7699221 2.20E-44 dispersed
Lac8g0535 Lac-Chr8:7699221 Lac9g2842 Lac-Chr9:46412527 4.50E-65 dispersed
Lac13g0572 Lac-Chr13:4237099 Lac8g0535 Lac-Chr8:7699221 1.80E-75 transposed
Lac3g0242 Lac-Chr3:1715191 Lac8g0535 Lac-Chr8:7699221 1.10E-78 transposed
Lac4g2723 Lac-Chr4:46172242 Lac8g0535 Lac-Chr8:7699221 2.40E-73 transposed
Lac6g0038 Lac-Chr6:352507 Lac8g0535 Lac-Chr8:7699221 2.70E-90 transposed
Lac8g0535 Lac-Chr8:7699221 Lac9g1138 Lac-Chr9:26659016 2.00E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24250 PF00847 AP2 2.50E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0535 - - - 0.0