Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g0535 | ATGGAGGCGCCAGCTTTGGTACTGAAGAACGAGGAGAATCTCAGAATATGTTGGACGGAAGGTCAAACTCAGGCCATGAGACGTGTCAAGCGACGGCGGAGAGAGCCTGCGACCGCCACCGCCGTCGATCAAACTAATAAGCAGCCGGGTCTGCAGCAACAAACCGATCAAGCTCCGACCACCACTACGAAGCGGAGTTCGAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGATTCGAAGCTCATTTATGGGATAAGCTTTCTTGGAACATGACACAGAAGAAGAAGGGCAAGCAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACCATCACTAATTTCCCAATATCAGAATATGAGAAGGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCATTGAGAAGAAAGAGCAGTGGATTTTCAAGAGGTGTATCAAAATATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTATCTCTATCTTGGAACTTACAGCACTCAAGAGGAAGCTGCTCGAGCTTATGATATGGCAGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGCCGAAGCCTCTGCCACCGCCCGCCGCCCCGATCGAAGCCCATATGGCGTCGGACCCCCACAAAGAACTCTGCAACTCCAGCTCCATCCCAGCAGAAGACACTTCCCTCTTCAAAAATCATCACTATGATGCCAATTCCCTCCATTCCCTTCAAAAGCAAGAGCTTCTTGAAAGCTGCAGCACCCCTCTTAGCAGCTATGCTAAATCTTCTTCTCCGTCAGCACTCGACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTGGTTGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGAGAAGAGGCCAAGACTCGAGTGCAGCTCGACAGTGTCTTCGATGAGTTTGGAGACATCTTCTGTGATAGACTTGCAGATGTACCGTTTGTTTGCAGCTCCAACAAAGAGCAGCAAGAAAGTGAGCTTCATTCGTTCTTTAATGGCACATTTCATCGCTTCAAAGCATCCTGA | 1173 | 47.91 | MEAPALVLKNEENLRICWTEGQTQAMRRVKRRRREPATATAVDQTNKQPGLQQQTDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWPKPLPPPAAPIEAHMASDPHKELCNSSSIPAEDTSLFKNHHYDANSLHSLQKQELLESCSTPLSSYAKSSSPSALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFGDIFCDRLADVPFVCSSNKEQQESELHSFFNGTFHRFKAS | 390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7699221 | 7702420 | + | Lag0027922.1 | Lac8g0535 | 616369 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g0535 | 390 | CDD | AP2 | 166 | 227 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | FunFam | AP2-like ethylene-responsive transcription factor | 166 | 227 | - | - | |
Lac8g0535 | 390 | Pfam | AP2 domain | 67 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | Pfam | AP2 domain | 166 | 217 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 54 | 263 | - | - | |
Lac8g0535 | 390 | CDD | AP2 | 67 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | PRINTS | Ethylene responsive element binding protein signature | 69 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | PRINTS | Ethylene responsive element binding protein signature | 207 | 227 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | Gene3D | AP2/ERF domain | 67 | 133 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | Gene3D | AP2/ERF domain | 166 | 226 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | SUPERFAMILY | DNA-binding domain | 67 | 133 | IPR016177 | GO:0003677(InterPro) | |
Lac8g0535 | 390 | ProSiteProfiles | AP2/ERF domain profile. | 167 | 225 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | MobiDBLite | consensus disorder prediction | 25 | 71 | - | - | |
Lac8g0535 | 390 | ProSiteProfiles | AP2/ERF domain profile. | 68 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | MobiDBLite | consensus disorder prediction | 39 | 67 | - | - | |
Lac8g0535 | 390 | SUPERFAMILY | DNA-binding domain | 166 | 227 | IPR016177 | GO:0003677(InterPro) | |
Lac8g0535 | 390 | SMART | rav1_2 | 167 | 231 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0535 | 390 | SMART | rav1_2 | 68 | 137 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac6g1794 | Lac-Chr6:28856523 | Lac8g0535 | Lac-Chr8:7699221 | 3.60E-67 | dispersed | |
Lac7g2109 | Lac-Chr7:34611476 | Lac8g0535 | Lac-Chr8:7699221 | 2.20E-44 | dispersed | |
Lac8g0535 | Lac-Chr8:7699221 | Lac9g2842 | Lac-Chr9:46412527 | 4.50E-65 | dispersed | |
Lac13g0572 | Lac-Chr13:4237099 | Lac8g0535 | Lac-Chr8:7699221 | 1.80E-75 | transposed | |
Lac3g0242 | Lac-Chr3:1715191 | Lac8g0535 | Lac-Chr8:7699221 | 1.10E-78 | transposed | |
Lac4g2723 | Lac-Chr4:46172242 | Lac8g0535 | Lac-Chr8:7699221 | 2.40E-73 | transposed | |
Lac6g0038 | Lac-Chr6:352507 | Lac8g0535 | Lac-Chr8:7699221 | 2.70E-90 | transposed | |
Lac8g0535 | Lac-Chr8:7699221 | Lac9g1138 | Lac-Chr9:26659016 | 2.00E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24250 | PF00847 | AP2 | 2.50E-09 | CL0081 | Lac | TF |
Pathway information
