Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0622 ATGGACTTGACTCCTGCAATTTCTACCGGCGGAGGAGCTGTGAAATCCCCTGAATTAGACGTTGAAACACCCATCAAAATCCAACCCACCACCAAATCTGCGCCCTTCACCAACGGTGTCCTCAAGCGCCACCATCACACGGCGCCGCCGCCGCCGCCGGTGGTTTACAAAGAATGTCTCAAGAACCACGCCGCCAGTTTGGGCGGCCATGCCTTAGACGGCTGCGGCGAGTTCATGCCCTCCCCCACCGCCACCGCTGCTGATCCTACTTCCCTCAAATGCGCTGCCTGCGGCTGCCACCGGAATTTTCACCGCCGTGAGCCGGAGGACCCAATTGCTACTCCGACGACAACCCATGTCATTGAGTACCAGCCCCACCACCGTCACCACCCGCCGCCACCGCCGCAGGCGGTGGCGGCCCACCGGAGCCCGAGCTCCGCCTCCCCTCCGCCGATCTCCTCCTCGTACTACCCTTCAGCCCCCCACATGCTTCTCGCCCTCTCCGGCGGCCTGGCAGAGAACGCTGGCGGCGGCGGCGGATTCCACCACTCGATTCTGACGCCGAGCCCGAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAAAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGCAGCGACGTCGGAGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTCTCGGGAAAAAAGACGGCGGCAGGAACATCAACGGCAGCGGCGGCGACGGCGACGGCGATGGCGATGGCGACGAGAAAATTAACGGCGGCGGCGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCCTCTTGA 888 59.35 MDLTPAISTGGGAVKSPELDVETPIKIQPTTKSAPFTNGVLKRHHHTAPPPPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATAADPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPQAVAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLAENAGGGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDGDGDEKINGGGEPHAAANGSSSSS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10283075 10283962 - Lag0028009.1 Lac8g0622 616456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0622 295 MobiDBLite consensus disorder prediction 124 154 - -
Lac8g0622 295 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
Lac8g0622 295 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Lac8g0622 295 Gene3D - 186 254 - -
Lac8g0622 295 FunFam Zinc-finger homeodomain protein 2 182 254 - -
Lac8g0622 295 SUPERFAMILY Homeodomain-like 186 254 IPR009057 -
Lac8g0622 295 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
Lac8g0622 295 NCBIfam homeobox domain, ZF-HD class 193 250 IPR006455 -
Lac8g0622 295 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 251 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac8g0622 295 MobiDBLite consensus disorder prediction 249 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0622 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0317 Lac-Chr13:2274851 Lac8g0622 Lac-Chr8:10283075 1.20E-36 dispersed
Lac8g0622 Lac-Chr8:10283075 Lac8g2681 Lac-Chr8:44329078 4.00E-74 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24252 PF04770 ZF-HD_dimer 2.10E-29 No_clan Lac TF