Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0622 ATGGACTTGACTCCTGCAATTTCTACCGGCGGAGGAGCTGTGAAATCCCCTGAATTAGACGTTGAAACACCCATCAAAATCCAACCCACCACCAAATCTGCGCCCTTCACCAACGGTGTCCTCAAGCGCCACCATCACACGGCGCCGCCGCCGCCGCCGGTGGTTTACAAAGAATGTCTCAAGAACCACGCCGCCAGTTTGGGCGGCCATGCCTTAGACGGCTGCGGCGAGTTCATGCCCTCCCCCACCGCCACCGCTGCTGATCCTACTTCCCTCAAATGCGCTGCCTGCGGCTGCCACCGGAATTTTCACCGCCGTGAGCCGGAGGACCCAATTGCTACTCCGACGACAACCCATGTCATTGAGTACCAGCCCCACCACCGTCACCACCCGCCGCCACCGCCGCAGGCGGTGGCGGCCCACCGGAGCCCGAGCTCCGCCTCCCCTCCGCCGATCTCCTCCTCGTACTACCCTTCAGCCCCCCACATGCTTCTCGCCCTCTCCGGCGGCCTGGCAGAGAACGCTGGCGGCGGCGGCGGATTCCACCACTCGATTCTGACGCCGAGCCCGAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAAAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGCAGCGACGTCGGAGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTCTCGGGAAAAAAGACGGCGGCAGGAACATCAACGGCAGCGGCGGCGACGGCGACGGCGATGGCGATGGCGACGAGAAAATTAACGGCGGCGGCGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCCTCTTGA 888 59.35 MDLTPAISTGGGAVKSPELDVETPIKIQPTTKSAPFTNGVLKRHHHTAPPPPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATAADPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPQAVAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLAENAGGGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDGDGDEKINGGGEPHAAANGSSSSS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10283075 10283962 - Lag0028009.1 Lac8g0622 616456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0622 295 MobiDBLite consensus disorder prediction 124 154 - -
Lac8g0622 295 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
Lac8g0622 295 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Lac8g0622 295 Gene3D - 186 254 - -
Lac8g0622 295 FunFam Zinc-finger homeodomain protein 2 182 254 - -
Lac8g0622 295 SUPERFAMILY Homeodomain-like 186 254 IPR009057 -
Lac8g0622 295 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
Lac8g0622 295 NCBIfam homeobox domain, ZF-HD class 193 250 IPR006455 -
Lac8g0622 295 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 251 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac8g0622 295 MobiDBLite consensus disorder prediction 249 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0317 Lac-Chr13:2274851 Lac8g0622 Lac-Chr8:10283075 1.20E-36 dispersed
Lac8g0622 Lac-Chr8:10283075 Lac8g2681 Lac-Chr8:44329078 4.00E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24252 PF04770 ZF-HD_dimer 2.10E-29 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0622 - - - 0.0