Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g0622 | ATGGACTTGACTCCTGCAATTTCTACCGGCGGAGGAGCTGTGAAATCCCCTGAATTAGACGTTGAAACACCCATCAAAATCCAACCCACCACCAAATCTGCGCCCTTCACCAACGGTGTCCTCAAGCGCCACCATCACACGGCGCCGCCGCCGCCGCCGGTGGTTTACAAAGAATGTCTCAAGAACCACGCCGCCAGTTTGGGCGGCCATGCCTTAGACGGCTGCGGCGAGTTCATGCCCTCCCCCACCGCCACCGCTGCTGATCCTACTTCCCTCAAATGCGCTGCCTGCGGCTGCCACCGGAATTTTCACCGCCGTGAGCCGGAGGACCCAATTGCTACTCCGACGACAACCCATGTCATTGAGTACCAGCCCCACCACCGTCACCACCCGCCGCCACCGCCGCAGGCGGTGGCGGCCCACCGGAGCCCGAGCTCCGCCTCCCCTCCGCCGATCTCCTCCTCGTACTACCCTTCAGCCCCCCACATGCTTCTCGCCCTCTCCGGCGGCCTGGCAGAGAACGCTGGCGGCGGCGGCGGATTCCACCACTCGATTCTGACGCCGAGCCCGAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAAAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGCAGCGACGTCGGAGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTCTCGGGAAAAAAGACGGCGGCAGGAACATCAACGGCAGCGGCGGCGACGGCGACGGCGATGGCGATGGCGACGAGAAAATTAACGGCGGCGGCGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCCTCTTGA | 888 | 59.35 | MDLTPAISTGGGAVKSPELDVETPIKIQPTTKSAPFTNGVLKRHHHTAPPPPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATAADPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPQAVAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLAENAGGGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDGDGDEKINGGGEPHAAANGSSSSS | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 10283075 | 10283962 | - | Lag0028009.1 | Lac8g0622 | 616456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g0622 | 295 | MobiDBLite | consensus disorder prediction | 124 | 154 | - | - | |
Lac8g0622 | 295 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 56 | 107 | IPR006456 | - | |
Lac8g0622 | 295 | Pfam | ZF-HD protein dimerisation region | 54 | 108 | IPR006456 | - | |
Lac8g0622 | 295 | Gene3D | - | 186 | 254 | - | - | |
Lac8g0622 | 295 | FunFam | Zinc-finger homeodomain protein 2 | 182 | 254 | - | - | |
Lac8g0622 | 295 | SUPERFAMILY | Homeodomain-like | 186 | 254 | IPR009057 | - | |
Lac8g0622 | 295 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 56 | 107 | IPR006456 | - | |
Lac8g0622 | 295 | NCBIfam | homeobox domain, ZF-HD class | 193 | 250 | IPR006455 | - | |
Lac8g0622 | 295 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 42 | 251 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Lac8g0622 | 295 | MobiDBLite | consensus disorder prediction | 249 | 295 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0317 | Lac-Chr13:2274851 | Lac8g0622 | Lac-Chr8:10283075 | 1.20E-36 | dispersed | |
Lac8g0622 | Lac-Chr8:10283075 | Lac8g2681 | Lac-Chr8:44329078 | 4.00E-74 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24252 | PF04770 | ZF-HD_dimer | 2.10E-29 | No_clan | Lac | TF |
Pathway information
