Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0724 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTGCCGGAGGCTTCTCCAGCCTCTCCTCCGCCGCCGTCGTCTCCACCTATTCTGACTGCCGGTGACCATAACACCACTTCTGTTAATCACGACCACCATGATTCTCCTTCTTCAAGCTTATCGCCGGAGGGCAATATCGATGGGGATGGTGAAGATCTGGAGGCCGATAAGGAGATTATGGGAGGTAAATCAGGTGGAACTAAGATGGAAGATGGAGATGGAGATGGAGATAGAGATGGAGATGGAGGCTTGTCGGTCTCGACTGGTGAGTTTACGAATTCGGATACTTCTGCTGTGAGATCGGAGAACTCTAAAGTACTGTCTGGTGAGGAAAGCAATCCATCGAGTACTACAAAGTCTGATGAACAGAATGAAACAAGTAACTCTCAAGAGAAGACCCTCAAGAAACCTGACAAGATACTTCCGTGCCCCCGTTGTAATAGCATGGATACCAAGTTCTGTTACTACAACAACTACAATGTCAATCAACCGCGGCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGTGGGACGATGAGGAACGTTCCCGTTGGTGCAGGGCGTCGTAAGAACAAAAACTCCGCTTCTCACCATCGTCAGATTATTGTTTCGGAAGCGCTTCATGCTCGAACTGATGTTTCTAATGGCATCCATCATTCTGCACTCAAACCTAATGGCAACGTATTGGCATTTGGTTCAGACACCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACCTTGCTGATAAAACAAGACAGAATAGCACTAGAAATGGCTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTGTGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAGCTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGATTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCGCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCCTTCTATCCGACTGCACCGTTTTGGGGTTGTACCGTTCCCAGTGCCTGGACCATACCGTGGCTTCCCCAGCCGCCATCTCTGAGCCCAGTTGCCCAAAACCATGCTCCAAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGAGCAAGCAGAGTGATTCTGGTGAAGATGAGCAGCAAAAAGATAACAAAGCTGAGAGATGCATTTGGATACCGAAAACTTTGAGGATCGACGACCCTGGGGAAGCAGCTAAAAGTTCCATATGGGCAACTCTGGGAATCAAGAATGACAAAACTGATTCTGTCAGTGAAGGGCTTTTCAAGGCCTTTCAATCGAAGAAGGGCGACGAAAAGAATCACAAAGCCGAACCTTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCAAGATCAATCAAATTCCACGAAAGCTCGTAA 1551 46.87 MSEPKDPAIKLFGKTIPLPEASPASPPPPSSPPILTAGDHNTTSVNHDHHDSPSSSLSPEGNIDGDGEDLEADKEIMGGKSGGTKMEDGDGDGDRDGDGGLSVSTGEFTNSDTSAVRSENSKVLSGEESNPSSTTKSDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHHRQIIVSEALHARTDVSNGIHHSALKPNGNVLAFGSDTPLCESMASILNLADKTRQNSTRNGFQKPEALKIPVACENGENDDQSQESAATPSFINNEEGKAGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSAPVPPPTFYPPGIPMPFYPTAPFWGCTVPSAWTIPWLPQPPSLSPVAQNHAPNSPTLGKHSRDENVSKQSDSGEDEQQKDNKAERCIWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKGDEKNHKAEPSPVLQVNPAALSRSIKFHESS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13372910 13374964 + Lag0028111.1 Lac8g0724 616558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0724 516 MobiDBLite consensus disorder prediction 35 61 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 103 141 - -
Lac8g0724 516 ProSiteProfiles Zinc finger Dof-type profile. 158 212 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g0724 516 MobiDBLite consensus disorder prediction 293 320 - -
Lac8g0724 516 Pfam Dof domain, zinc finger 156 212 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g0724 516 MobiDBLite consensus disorder prediction 72 97 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 396 437 - -
Lac8g0724 516 ProSitePatterns Zinc finger Dof-type signature. 160 196 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g0724 516 MobiDBLite consensus disorder prediction 142 156 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 414 437 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 483 516 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 396 413 - -
Lac8g0724 516 PANTHER CYCLIC DOF FACTOR 2 1 516 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0724 516 MobiDBLite consensus disorder prediction 20 34 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 1 158 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 294 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0082 Lac-Chr10:647831 Lac8g0724 Lac-Chr8:13372910 8.20E-76 dispersed
Lac13g0326 Lac-Chr13:2339726 Lac8g0724 Lac-Chr8:13372910 1.30E-67 dispersed
Lac3g0612 Lac-Chr3:4746171 Lac8g0724 Lac-Chr8:13372910 5.50E-102 dispersed
Lac8g0724 Lac-Chr8:13372910 Lac9g2549 Lac-Chr9:44155337 1.20E-22 dispersed
Lac7g2228 Lac-Chr7:36961972 Lac8g0724 Lac-Chr8:13372910 3.60E-54 wgd
Lac7g2513 Lac-Chr7:43121708 Lac8g0724 Lac-Chr8:13372910 2.70E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24254 PF02701 zf-Dof 3.30E-32 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0724 - - - 0.0