Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g0724 | ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTGCCGGAGGCTTCTCCAGCCTCTCCTCCGCCGCCGTCGTCTCCACCTATTCTGACTGCCGGTGACCATAACACCACTTCTGTTAATCACGACCACCATGATTCTCCTTCTTCAAGCTTATCGCCGGAGGGCAATATCGATGGGGATGGTGAAGATCTGGAGGCCGATAAGGAGATTATGGGAGGTAAATCAGGTGGAACTAAGATGGAAGATGGAGATGGAGATGGAGATAGAGATGGAGATGGAGGCTTGTCGGTCTCGACTGGTGAGTTTACGAATTCGGATACTTCTGCTGTGAGATCGGAGAACTCTAAAGTACTGTCTGGTGAGGAAAGCAATCCATCGAGTACTACAAAGTCTGATGAACAGAATGAAACAAGTAACTCTCAAGAGAAGACCCTCAAGAAACCTGACAAGATACTTCCGTGCCCCCGTTGTAATAGCATGGATACCAAGTTCTGTTACTACAACAACTACAATGTCAATCAACCGCGGCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGTGGGACGATGAGGAACGTTCCCGTTGGTGCAGGGCGTCGTAAGAACAAAAACTCCGCTTCTCACCATCGTCAGATTATTGTTTCGGAAGCGCTTCATGCTCGAACTGATGTTTCTAATGGCATCCATCATTCTGCACTCAAACCTAATGGCAACGTATTGGCATTTGGTTCAGACACCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACCTTGCTGATAAAACAAGACAGAATAGCACTAGAAATGGCTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTGTGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAGCTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGATTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCGCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCCTTCTATCCGACTGCACCGTTTTGGGGTTGTACCGTTCCCAGTGCCTGGACCATACCGTGGCTTCCCCAGCCGCCATCTCTGAGCCCAGTTGCCCAAAACCATGCTCCAAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGAGCAAGCAGAGTGATTCTGGTGAAGATGAGCAGCAAAAAGATAACAAAGCTGAGAGATGCATTTGGATACCGAAAACTTTGAGGATCGACGACCCTGGGGAAGCAGCTAAAAGTTCCATATGGGCAACTCTGGGAATCAAGAATGACAAAACTGATTCTGTCAGTGAAGGGCTTTTCAAGGCCTTTCAATCGAAGAAGGGCGACGAAAAGAATCACAAAGCCGAACCTTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCAAGATCAATCAAATTCCACGAAAGCTCGTAA | 1551 | 46.87 | MSEPKDPAIKLFGKTIPLPEASPASPPPPSSPPILTAGDHNTTSVNHDHHDSPSSSLSPEGNIDGDGEDLEADKEIMGGKSGGTKMEDGDGDGDRDGDGGLSVSTGEFTNSDTSAVRSENSKVLSGEESNPSSTTKSDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHHRQIIVSEALHARTDVSNGIHHSALKPNGNVLAFGSDTPLCESMASILNLADKTRQNSTRNGFQKPEALKIPVACENGENDDQSQESAATPSFINNEEGKAGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSAPVPPPTFYPPGIPMPFYPTAPFWGCTVPSAWTIPWLPQPPSLSPVAQNHAPNSPTLGKHSRDENVSKQSDSGEDEQQKDNKAERCIWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKGDEKNHKAEPSPVLQVNPAALSRSIKFHESS | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 13372910 | 13374964 | + | Lag0028111.1 | Lac8g0724 | 616558 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 35 | 61 | - | - | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 103 | 141 | - | - | |
Lac8g0724 | 516 | ProSiteProfiles | Zinc finger Dof-type profile. | 158 | 212 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 293 | 320 | - | - | |
Lac8g0724 | 516 | Pfam | Dof domain, zinc finger | 156 | 212 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 72 | 97 | - | - | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 396 | 437 | - | - | |
Lac8g0724 | 516 | ProSitePatterns | Zinc finger Dof-type signature. | 160 | 196 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 142 | 156 | - | - | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 414 | 437 | - | - | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 483 | 516 | - | - | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 396 | 413 | - | - | |
Lac8g0724 | 516 | PANTHER | CYCLIC DOF FACTOR 2 | 1 | 516 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 1 | 158 | - | - | |
Lac8g0724 | 516 | MobiDBLite | consensus disorder prediction | 294 | 315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0082 | Lac-Chr10:647831 | Lac8g0724 | Lac-Chr8:13372910 | 8.20E-76 | dispersed | |
Lac13g0326 | Lac-Chr13:2339726 | Lac8g0724 | Lac-Chr8:13372910 | 1.30E-67 | dispersed | |
Lac3g0612 | Lac-Chr3:4746171 | Lac8g0724 | Lac-Chr8:13372910 | 5.50E-102 | dispersed | |
Lac8g0724 | Lac-Chr8:13372910 | Lac9g2549 | Lac-Chr9:44155337 | 1.20E-22 | dispersed | |
Lac7g2228 | Lac-Chr7:36961972 | Lac8g0724 | Lac-Chr8:13372910 | 3.60E-54 | wgd | |
Lac7g2513 | Lac-Chr7:43121708 | Lac8g0724 | Lac-Chr8:13372910 | 2.70E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24254 | PF02701 | zf-Dof | 3.30E-32 | No_clan | Lac | TF |
Pathway information
