Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0724 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTGCCGGAGGCTTCTCCAGCCTCTCCTCCGCCGCCGTCGTCTCCACCTATTCTGACTGCCGGTGACCATAACACCACTTCTGTTAATCACGACCACCATGATTCTCCTTCTTCAAGCTTATCGCCGGAGGGCAATATCGATGGGGATGGTGAAGATCTGGAGGCCGATAAGGAGATTATGGGAGGTAAATCAGGTGGAACTAAGATGGAAGATGGAGATGGAGATGGAGATAGAGATGGAGATGGAGGCTTGTCGGTCTCGACTGGTGAGTTTACGAATTCGGATACTTCTGCTGTGAGATCGGAGAACTCTAAAGTACTGTCTGGTGAGGAAAGCAATCCATCGAGTACTACAAAGTCTGATGAACAGAATGAAACAAGTAACTCTCAAGAGAAGACCCTCAAGAAACCTGACAAGATACTTCCGTGCCCCCGTTGTAATAGCATGGATACCAAGTTCTGTTACTACAACAACTACAATGTCAATCAACCGCGGCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGTGGGACGATGAGGAACGTTCCCGTTGGTGCAGGGCGTCGTAAGAACAAAAACTCCGCTTCTCACCATCGTCAGATTATTGTTTCGGAAGCGCTTCATGCTCGAACTGATGTTTCTAATGGCATCCATCATTCTGCACTCAAACCTAATGGCAACGTATTGGCATTTGGTTCAGACACCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACCTTGCTGATAAAACAAGACAGAATAGCACTAGAAATGGCTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTGTGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAGCTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGATTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCGCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCCTTCTATCCGACTGCACCGTTTTGGGGTTGTACCGTTCCCAGTGCCTGGACCATACCGTGGCTTCCCCAGCCGCCATCTCTGAGCCCAGTTGCCCAAAACCATGCTCCAAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGAGCAAGCAGAGTGATTCTGGTGAAGATGAGCAGCAAAAAGATAACAAAGCTGAGAGATGCATTTGGATACCGAAAACTTTGAGGATCGACGACCCTGGGGAAGCAGCTAAAAGTTCCATATGGGCAACTCTGGGAATCAAGAATGACAAAACTGATTCTGTCAGTGAAGGGCTTTTCAAGGCCTTTCAATCGAAGAAGGGCGACGAAAAGAATCACAAAGCCGAACCTTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCAAGATCAATCAAATTCCACGAAAGCTCGTAA 1551 46.87 MSEPKDPAIKLFGKTIPLPEASPASPPPPSSPPILTAGDHNTTSVNHDHHDSPSSSLSPEGNIDGDGEDLEADKEIMGGKSGGTKMEDGDGDGDRDGDGGLSVSTGEFTNSDTSAVRSENSKVLSGEESNPSSTTKSDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHHRQIIVSEALHARTDVSNGIHHSALKPNGNVLAFGSDTPLCESMASILNLADKTRQNSTRNGFQKPEALKIPVACENGENDDQSQESAATPSFINNEEGKAGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSAPVPPPTFYPPGIPMPFYPTAPFWGCTVPSAWTIPWLPQPPSLSPVAQNHAPNSPTLGKHSRDENVSKQSDSGEDEQQKDNKAERCIWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKGDEKNHKAEPSPVLQVNPAALSRSIKFHESS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13372910 13374964 + Lag0028111.1 Lac8g0724 616558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0724 516 MobiDBLite consensus disorder prediction 35 61 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 103 141 - -
Lac8g0724 516 ProSiteProfiles Zinc finger Dof-type profile. 158 212 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g0724 516 MobiDBLite consensus disorder prediction 293 320 - -
Lac8g0724 516 Pfam Dof domain, zinc finger 156 212 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g0724 516 MobiDBLite consensus disorder prediction 72 97 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 396 437 - -
Lac8g0724 516 ProSitePatterns Zinc finger Dof-type signature. 160 196 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g0724 516 MobiDBLite consensus disorder prediction 142 156 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 414 437 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 483 516 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 396 413 - -
Lac8g0724 516 PANTHER CYCLIC DOF FACTOR 2 1 516 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g0724 516 MobiDBLite consensus disorder prediction 20 34 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 1 158 - -
Lac8g0724 516 MobiDBLite consensus disorder prediction 294 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0724 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0082 Lac-Chr10:647831 Lac8g0724 Lac-Chr8:13372910 8.20E-76 dispersed
Lac13g0326 Lac-Chr13:2339726 Lac8g0724 Lac-Chr8:13372910 1.30E-67 dispersed
Lac3g0612 Lac-Chr3:4746171 Lac8g0724 Lac-Chr8:13372910 5.50E-102 dispersed
Lac8g0724 Lac-Chr8:13372910 Lac9g2549 Lac-Chr9:44155337 1.20E-22 dispersed
Lac7g2228 Lac-Chr7:36961972 Lac8g0724 Lac-Chr8:13372910 3.60E-54 wgd
Lac7g2513 Lac-Chr7:43121708 Lac8g0724 Lac-Chr8:13372910 2.70E-22 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT1G29160 52.5 1.6e-41 166.8
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-39 160.6
Lac8g2507 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 66.7 6.8e-38 155.6
Lac7g2704 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.4e-37 152.9
Lac3g0612 . 115 466 C2C2-Dof Transcription Factor Family AT3G47500 53.1 2.2e-87 320.5
Lac8g0724 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.3 5.0e-76 282.7
Lac1g2524 . 1 149 C2C2-Dof Transcription Factor Family AT5G66940 56.3 2.7e-38 156.4
Lac7g2704 . 66 141 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.8e-38 157.1
Lac1g2032 . 53 126 C2C2-Dof Transcription Factor Family AT5G02460 87.8 9.0e-37 152.1
Lac10g3099 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.9e-37 153.7
Lac3g0537 . 29 325 C2C2-Dof Transcription Factor Family AT5G60850 52.9 2.4e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008734 0 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24254 PF02701 zf-Dof 3.30E-32 No_clan Lac TF